<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17421

Description probable mediator of RNA polymerase II transcription subunit 26c
SequenceMATMDLDDFREVLESCGVDVWTFIDTAITVASSDYGDELKHRRDGIVERLYAATSPGQPRCRNCDDVDNLRPNNRREAKAPAGKDSSGHEGKGGSPMTPQSVEGEDVGDLDPYGGLFDDEQTKILEIKEHLEDPDQSDDSLVELLQSLADMDITFQALKETDIGRHVNRLRKHSSSDVRRLVKLLVRKWKDIVDEWVKLNQPGEQTSSALMEDGESPPRKIPQNGHHQVPDFGYSPNPHNGSSGSDKNNSESEPKPKVIPRKEAPLRPAQSTTLSASAHQNRQREEKDFDSERLASARKRLQENYKEAQNAKKQRTIQVMDIHDIPKPKNTFFAKNRGGGGGSHGRRW
Length348
PositionUnknown
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.05
Grand average of hydropathy-1.051
Instability index49.07
Isoelectric point5.83
Molecular weight39009.66
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17421
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.05|      18|      37|      55|      72|       1
---------------------------------------------------------------------------
   55-   72 (37.08/24.57)	SPGQPRCRNCDDVDNLRP
   95-  112 (33.97/21.87)	SPMTPQSVEGEDVGDLDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     147.69|      34|      37|     190|     223|       2
---------------------------------------------------------------------------
  152-  183 (41.52/21.53)	.DITFQALKETDIGRHVNR.LRKHSSS.D.VRRLVK
  190-  223 (58.09/32.77)	KDIVDEWVKLNQPGEQTSSALMEDGES.P.PRKIPQ
  227-  261 (48.07/25.98)	HQVPDFGYSPN.PHNGSSGSDKNNSESePkPKVIPR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17421 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GQPRCRNCDDVDNLRPNNRREAKAPAGKDSSGHEGKGGSPMTPQSVEGEDVGDLDPY
2) NQPGEQTSSALMEDGESPPRKIPQNGHHQVPDFGYSPNPHNGSSGSDKNNSESEPKPKVIPRKEAPLRPAQSTTLSASAHQNRQREEKDFDSERLASARKRLQENYKEAQNAKKQRTIQVMDIHDIPKPKNTFFAKNRGGGGGSHGRRW
57
200
113
348










Molecular Recognition Features






MoRF SequenceStartStop




1) GGSHGRRW
2) MDIHDIPKPKNTFFAKNRGG
341
320
348
339