<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17417

Description U-box domain-containing protein 33-like
SequenceMESGSHESSLLITRSRSVPLGNMNRSNDLEIGGSDCMRSRSVAQDYNWDGINNIGSTSTSALNSINAFQGGTDQELSSPKSTIRRSDAGGSCTSIELDALSRSASSIYSPRGVHDFTLGHQLPQQTAPTLILDHQVFGFSHALSPNLGCSTSTSDPTKFASNSNINGAQSCVADRSFDNSNYGKLQQVMLEAEKLTLFQQKVASQFREAMGQAQEELICRSREIEEAKVKGEELEKMKNQLYQVMEHIQTFQENQTSLEKQIAKLQVDRDNAIKKAEELRNTQGEYSSGNMRIQFSEFSPSVIKEATKNFDESLKIGGGGFGNVYRGLILQTDVAIKRLQSTCGQGMAEFQAEVRVLSQLSHPNLVKLIGCCPEESALVYEYLPNGSLLDRLRCRDNTPSIPWETRLSIIKELCSVLTYLHSRKPHSFVHGDLKPSNILLDENFVSKLSDFGICRELCQDQCSNKDTTLCRITRPKGTSDYIDPDFFETGKLTMKADVYSFGIILLELLTNRSPSFVIFDVKLALETGNLEALLDQSAGGWPLLVAKDLAELALKCCDKNRKNRPKLESDVWKVLESLSACKFVGSSSS
Length589
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.06
Grand average of hydropathy-0.398
Instability index45.26
Isoelectric point5.73
Molecular weight65146.75
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17417
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.08|      41|      42|     158|     199|       1
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  158-  199 (64.30/48.60)	KFASN..SNINGAQSCVADRSFDNSNyGKLQQVMLEAEKLTLFQ
  201-  243 (62.77/41.95)	KVASQfrEAMGQAQEELICRSREIEE.AKVKGEELEKMKNQLYQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.08|      17|      21|      70|      89|       2
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   72-   89 (25.51/20.19)	TDQE...LSSPKSTIrRSDAG
   93-  112 (24.57/ 8.19)	TSIEldaLSRSASSI.YSPRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.45|      56|      87|     371|     434|       3
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  371-  434 (79.99/76.84)	CCPEESALVYEYLPNGSlLDRLrcrDntPSIpWET.RLSIIKELCS....VLTYLHSRKPhSFVHGDLK
  462-  522 (90.46/56.04)	CSNKDTTLCRITRPKGT.SDYI...D..PDF.FETgKLTMKADVYSfgiiLLELLTNRSP.SFVIFDVK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.04|      15|      20|     113|     129|       5
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  113-  129 (24.45/19.77)	VHDFTlgHQL.PQQTAPT
  136-  151 (24.59/13.07)	VFGFS..HALsPNLGCST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.49|      24|      42|     247|     274|       8
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  245-  272 (31.17/33.77)	MEH.................IQtFQENQTSLEKQIAKlqvDRDNA
  273-  313 (29.32/18.16)	IKKaeelrntqgeyssgnmrIQ.FSEFSPSVIKEATK...NFDES
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17417 with Med32 domain of Kingdom Viridiplantae
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