<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17415

Description probable mediator of RNA polymerase II transcription subunit 26b isoform X2
SequenceMAKKPGPLEYWRNYFRTANSDIFDIIDHAIMVAASDCPKEFRLRRDRIAERLFSCRLTRCSGCDRVELAVPGGEEEEEDDDVGGCKSSGFDRGRCEFEAGGSKESKVNSSRDDQGEMNMKPVSTYSYGDAEALTDEIEEESQIVGEVLRIKEILYNSEEEPDSVLSESLRKLQLMALTVDILKATEIGKAVNRLRKHASKQIRHIARTLIDGWKDMVDEWVSATTTIAEGTSDSVNPSVVDEEEGLPSPPLDEGVFFATQPTSMELSQFFDGMDDDGNPRDSGEFSKNRDNGRKPAQECQNSTKQKLQMPNVVNVLAKDNKSHQVKKQEVFLKPSKPSNTDYGPGRPLKPSTEQMVNNETKYKQKSDKVAIQKRPAGDQQDKFKCSDEVAVQVKLEATKRKLQERYQQAENAKRQRTIQVMELHDLPKQGLGHRNPHVKPGNHNRHWAHGRR
Length452
PositionUnknown
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.937
Instability index47.12
Isoelectric point5.93
Molecular weight51067.52
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17415
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.84|      17|      28|      59|      75|       1
---------------------------------------------------------------------------
   59-   75 (32.84/17.64)	RCSGCD..RVELAVPGGEE
   86-  104 (27.00/13.48)	KSSGFDrgRCEFEAGGSKE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.75|      11|      19|     332|     342|       2
---------------------------------------------------------------------------
  332-  342 (21.52/12.84)	LKPSK....PSNTDY
  348-  362 (15.23/ 7.17)	LKPSTeqmvNNETKY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.18|      13|      28|     244|     256|       3
---------------------------------------------------------------------------
  244-  256 (25.11/12.86)	EGLPSP..PLDEGVF
  271-  285 (21.08/ 9.78)	DGMDDDgnPRDSGEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.26|      26|      28|     391|     416|       4
---------------------------------------------------------------------------
  391-  416 (41.35/25.78)	VQV.KL.EATKRKLQERYQQAENAKRQR
  418-  445 (37.91/23.07)	IQVmELhDLPKQGLGHRNPHVKPGNHNR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17415 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EATKRKLQERYQQAENAKRQRTIQVMELHDLPKQGLGHRNPHVKPGNHNRHWAHGRR
2) HQVKKQEVFLKPSKPSNTDYGPGRPLKPSTEQMVNNETKYKQKSDKVAIQKRPAGDQQDKFKCSDEVA
3) SQFFDGMDDDGNPRDSGEFSKNRDNGRKPAQECQNSTKQKLQMPNVVNVLAKDN
4) TTTIAEGTSDSVNPSVVDEEEGLPSPPLDEGVFFA
396
323
267
224
452
390
320
258










Molecular Recognition Features






MoRF SequenceStartStop




1) LEYWRNYFR
2) NHNRHWAHGRR
3) VKKQEVFLK
8
442
325
16
452
333