<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17410

Description pre-mRNA-processing protein 40A-like isoform X2
SequenceMANNPRFSGVQPPIVGSVEPPRSFVAPMSSQFRQVVPAQQSQQFNPVPSQHFYPVGLGAPRMNVGLPHHHALQPQFSQSMQQFPPRPGQPGQPGHATLPSQAIPLPIAQPNLHITSEKPIPQINSQTPNSYSPVLGGPERPLTSSYTFASSSYGQPHTNFSASTQYQFTPQMHAPDISSGRQLGLSSESQGTATVAQYAKQPLVPTTVTSATIIQPNTTRESPTDWIEHTSADGRRYYHNKKTRQSSWEKPLELMTPIEMLTGTWSATLLRGRTCCGYLLLSLATILLEYCRSMSLTSPKLFGLGGREKADASTNWKEYTSPDGRKYYYNKVTKESKWSIPEELKLAREQVEKASFMGTQPDTFEIPLVSTTVPPSVVKAPSGGETSSSPAQGVASSPASEGHDVAAGDLKPPLLSETPASTVVASTTDENANGTQTLLNVAALSDAVPENSEAAVTIASTIHAPMENADNLSAEDVPNSADGAPAKVVEGVDAIEALEEVKKDEIGEKLNDIGLEAKSVDPEPMIYANKLEAKNAFKALLESANVGSDWTWDRAMRVIINDRRYGALKTLGERKQVFNEFLSQRKKQEAEERRIKLKKAREEFKQMLEESSELTSSTRWSKAVSMFENDERFKAVERDRERRDLFDNYLGELKEKERARAEEERKRNVMEYRQFLESCDFIKADSQWRKLQDRLEADERCSRLEKMDRLDIFMEYTHDLEKEEEERRKIQKEELRKVERKNRDEFRKLMEEHVTAGTLTAKTHWRDYCMKVKDLLAYTEVASNTSGSTPKELFQDVLEELEKQYHEDKTRIKDAVKLGKILLSSTWVLEDFKFAISKDFSPPISDVNLKLIFDELLERVREKEEKEAKKRKRLADDFFHLLSSIKEITASSKWEDCKQLFADSREFSSIGEESLCREIFEQYISQLKEQAKEHERKRKEEKAKKEKEREEKEKRKVKQRREKEEGREREKDEEDNIKKQRKRHQSSEDIVDENEKDRSRKSHGSSDHKKSRRHASAPESDDESRHKRHKRDHRNGSRRYGDHEELEDGEFGEDRQSW
Length1058
PositionUnknown
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.07
Grand average of hydropathy-0.950
Instability index54.11
Isoelectric point6.26
Molecular weight120697.52
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17410
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.54|      14|      17|     935|     951|       1
---------------------------------------------------------------------------
  947-  965 (15.37/ 9.36)	KEREEkekrkVKQRREKEE
  967-  980 (20.17/ 7.91)	REREK.....DEEDNIKKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      95.50|      17|      17|     132|     148|       2
---------------------------------------------------------------------------
   53-   70 (22.24/ 8.80)	YPVgLGAPRMNVGLP..HHH
   84-   98 (24.38/10.33)	PPR.PGQPGQP..GH..ATL
  132-  148 (29.37/13.89)	SPV.LGGPERPLTSS..YTF
  152-  168 (19.51/ 6.85)	S...YGQPHTNFSAStqYQF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.48|      13|      17|    1001|    1013|       3
---------------------------------------------------------------------------
 1001- 1013 (23.54/13.65)	KSHGSSDHKKSRR
 1019- 1031 (21.94/12.17)	ESDDESRHKRHKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     271.72|      36|      36|     657|     692|       4
---------------------------------------------------------------------------
  570-  599 (33.25/14.27)	TL.G..ERKQVFN............EFL...SQ.RKKQ......E...A.EERRiklKK
  600-  642 (42.19/20.01)	AR.E..EFKQMLEES..........SELTSSTRWSKAVsmfendERFKAvERDR...ER
  643-  667 (37.12/16.76)	RD.L...FDNYLGE.............LKE.......K......ERARA.EEER...KR
  668-  703 (56.90/29.45)	NV.M..EYRQFLESC..........DFIKADSQWRKLQ......DRLEA.DERC...SR
  711-  743 (34.57/15.12)	DIfM..EYTHDLE...............KEEEERRKIQ.....kEELRK.VERK...NR
  872-  899 (30.62/12.59)	KR.LadDFFHLLSSI..........KEITASSKWE.................DC...KQ
  903-  945 (37.08/16.73)	DS.R..EFSSIGEESlcreifeqyiSQLKEQA...KEH......ERKRK.EEKA...KK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.77|      31|      36|     405|     440|       5
---------------------------------------------------------------------------
  382-  403 (25.58/ 9.76)	..SG.GE.....TSS...SPAQGVASSPASE...GH.
  404-  436 (46.14/29.33)	DVAA.GDlKPPLLSE...TPASTVVASTTDENAnGTQ
  440-  470 (35.04/20.35)	NVAAlSD.AVPENSEaavTIASTIHAPM..ENA...D
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     152.96|      35|      87|     220|     254|       6
---------------------------------------------------------------------------
  220-  237 (24.83/10.30)	........................RE...SPTDWIEHT.SAD...GRR...Y
  238-  278 (40.96/22.17)	YHNKKTRQSSWEKPLEL...........mTPIEMLTGTwSATllrGRTccgY
  290-  327 (41.01/22.21)	Y....CRSMSLTSP...klfglggREkadASTNWKEYT.SPD...GRK...Y
  328-  358 (46.16/25.99)	YYNKVTKESKWSIPEEL.......KL...A.REQVEKA.SFM...G......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.74|      12|      28|     755|     767|       7
---------------------------------------------------------------------------
  755-  767 (18.83/14.16)	TAGTlTAKTHWRD
  785-  796 (21.92/11.79)	TSGS.TPKELFQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.74|      15|      28|     483|     497|       8
---------------------------------------------------------------------------
  483-  497 (24.73/16.65)	GAPAKVVEGVDAIEA
  514-  528 (27.00/18.91)	GLEAKSVDPEPMIYA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.62|      13|     105|      99|     111|       9
---------------------------------------------------------------------------
   99-  111 (24.52/15.10)	PSQAIPLPIAQ.PN
  116-  129 (20.10/10.97)	SEKPIPQINSQtPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.00|      18|      29|     797|     823|      11
---------------------------------------------------------------------------
  797-  814 (30.37/10.91)	VLEELEKQYHED.KTRIKD
  828-  846 (23.63/18.50)	VLEDFKFAISKDfSPPISD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17410 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KEQAKEHERKRKEEKAKKEKEREEKEKRKVKQRREKEEGREREKDEEDNIKKQRKRHQSSEDIVDENEKDRSRKSHGSSDHKKSRRHASAPESDDESRHKRHKRDHRNGSRRYGDHEELEDGEFGEDRQSW
2) NFSASTQYQFTPQMHAPDISSGRQLGLSSESQGT
3) NVGLPHHHALQPQFSQSMQQFPPRPGQPGQPGHATLPSQAIPLPIAQPNLHITSEKPIPQINSQTPNSYSPVLGGPERPLTSSYTFASS
4) PSVVKAPSGGETSSSPAQGVASSPASEGHDVAAGDLKPPLLSETPASTVVASTTDENANGTQTLLNVAALSD
5) SEAAVTIASTIHAPMENADNLSAEDVPNSADGAPA
928
159
63
375
452
1058
192
151
446
486










Molecular Recognition Features






MoRF SequenceStartStop




1) ESRHKRHKRDH
2) HEELEDG
1023
1043
1033
1049