<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17408

Description pre-mRNA-processing protein 40A-like isoform X4
SequenceMANNPRFSGVQPLQPPIVGSVEPPRSFVAPMSSQFRQVVPAQQSQQFNPVPSQHFYPVGLGAPRMNVGLPHHHALQPQFSQSMQQFPPRPGQPGQPGHATLPSQAIPLPIAQPNLHITSEKPIPQINSQTPNSYSPVLGGPERPLTSSYTFASSSYGQPHTNFSASTQYQFTPQMHAPDISSGRQLGLSSESQGTATVAQYAKQPLVPTTVTSATIIQPNTTRESPTDWIEHTSADGRRYYHNKKTRQSSWEKPLELMTPIEKADASTNWKEYTSPDGRKYYYNKVTKESKWSIPEELKLAREQVEKASFMGTQPDTFEIPLVSTTVPPSVVKAPSGGETSSSPAQGVASSPASEGHDVAAGDLKPPLLSETPASTVVASTTDENANGTQTLLNVAALSDAVPENSEAAVTIASTIHAPMENADNLSAEDVPNSADGAPAKVVEGVDAIEALEEVKKDEIGEKLNDIGLEAKSVDPEPMIYANKLEAKNAFKALLESANVGSDWTWDRAMRVIINDRRYGALKTLGERKQVFNEFLSQRKKQEAEERRIKLKKAREEFKQMLEESSELTSSTRWSKAVSMFENDERFKAVERDRERRDLFDNYLGELKEKERARAEEERKRNVMEYRQFLESCDFIKADSQWRKLQDRLEADERCSRLEKMDRLDIFMEYTHDLEKEEEERRKIQKEELRKVERKNRDEFRKLMEEHVTAGTLTAKTHWRDYCMKVKDLLAYTEVASNTSGSTPKELFQDVLEELEKQYHEDKTRIKDAVKLGKILLSSTWVLEDFKFAISKDFSPPISDVNLKLIFDELLERVREKEEKEAKKRKRLADDFFHLLSSIKEITASSKWEDCKQLFADSREFSSIGEESLCREIFEQYISQLKEQAKEHERKRKEEKAKKEKEREEKEKRKVKQRREKEEGREREKDEEDNIKKQRKRHQSSEDIVDENEKDRSRKSHGSSDHKKSRRHASAPESDDESRHKRHKRDHRNGSRRYGDHEELEDGEFGEDRQSW
Length1012
PositionUnknown
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.07
Grand average of hydropathy-1.018
Instability index55.39
Isoelectric point6.11
Molecular weight115698.59
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17408
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     373.27|      64|      65|     763|     826|       1
---------------------------------------------------------------------------
  559-  619 (87.09/51.43)	KQM...LEESSEL...TSSTRWSKAVSM..FENDERFKAVERD.............RER.R.....DLFDNYLGELKE.........KERARAEEER
  630-  683 (56.87/30.85)	LEScdfIK.........ADSQW...R.K..LQDRLEADERCS...............RL.EkmdrlDIFMEYTHDL............EKEEEERRK
  701-  761 (58.09/31.68)	RKL...MEEHVTAGTLTAKTHW............RDYCMKVKDllaytevasntsgSTP.K.....ELFQDVLEEL.E.........KQYHE.....
  763-  826 (98.93/59.49)	KTR...IKDAVKLGKILLSSTWVLEDFK..FAISKDFSPPISD.............VNL.K.....LIFDELLERVRE.........KEEKEAKKRK
  836-  901 (72.29/41.35)	LSS...IKE......ITASSKW..EDCKqlFADSREFS.SIGE.............ESLcR.....EIFEQYISQLKEqakeherkrKEEK.AKKEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      56.23|      16|      17|     902|     917|       2
---------------------------------------------------------------------------
  916-  935 (17.51/ 6.91)	EK....eegrEREKDEEDNIKKQR
  949-  964 (22.05/11.03)	EK........DRSRKSHGSSDHKK
  965-  988 (16.67/ 6.15)	SRrhasapesDDESRHKRHKRDHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.44|      38|      38|     219|     256|       3
---------------------------------------------------------------------------
  219-  256 (75.47/45.95)	PNTTRESPTDWIEHTSADGRRYYHNKKTRQSSWEKPLE
  260-  297 (73.97/44.90)	PIEKADASTNWKEYTSPDGRKYYYNKVTKESKWSIPEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     240.36|      36|      36|      42|      77|       4
---------------------------------------------------------------------------
    4-   37 (26.84/10.86)	......NP...RFSgvQPLQPpiVGsVEPPRSFVA.PMSSQF....RQ
   42-   77 (66.04/37.53)	QQSQQFNP...VPS..QHFYP..VG.LGAPRMNVGLPHHHAL....QP
   81-  113 (58.72/32.55)	QSMQQFPP...RPG..QPGQP..GH.ATLPSQAIPLP...IA....QP
  121-  159 (46.55/24.26)	KPIPQINS...QTP..NSYSP..V..LGGPERPLTSSYTFASssygQP
  166-  205 (42.20/21.30)	STQYQFTPqmhAPD.iSSGRQ..LG.LSSESQGTATVAQYAK....QP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     116.43|      27|      28|     394|     421|       5
---------------------------------------------------------------------------
  324-  346 (29.22/15.78)	.....STTVPPSVVKAPSGGETSSSPAQ
  347-  367 (26.35/13.73)	GVA..SSPASEGHDVA...AGDLKPP..
  369-  387 (23.24/10.84)	....LSET.P....ASTVVASTTDENAN
  394-  421 (37.63/27.63)	NVAaLSDAVPENSEAAVTIASTIHAPME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.85|      18|      28|     490|     508|       6
---------------------------------------------------------------------------
  490-  507 (31.10/18.95)	AFKALLESANVGSDWTWD
  509-  526 (27.74/21.56)	AMRVIINDRRYGALKTLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.74|      15|      28|     437|     451|       7
---------------------------------------------------------------------------
  437-  451 (24.73/14.81)	GAPAKVVEGVDAIEA
  468-  482 (27.00/16.83)	GLEAKSVDPEPMIYA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17408 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EQVEKASFMGTQPDTFEIPLVSTTVPPSVVKAPSGGETSSSPAQGVASSPASEGHDVAAGDLKPPLLSETPASTVVASTTDENANGTQTLLNVAALSD
2) KEQAKEHERKRKEEKAKKEKEREEKEKRKVKQRREKEEGREREKDEEDNIKKQRKRHQSSEDIVDENEKDRSRKSHGSSDHKKSRRHASAPESDDESRHKRHKRDHRNGSRRYGDHEELEDGEFGEDRQSW
3) NVGLPHHHALQPQFSQSMQQFPPRPGQPGQPGHATLPSQAIPLPIAQPNLHITSEKPIPQINSQTPNSYSPVLGGPERPLTSSYTFASS
4) PHTNFSASTQYQFTPQMHAPDISSGRQLGLSSESQGTATVAQYAKQ
5) SEAAVTIASTIHAPMENADNLSAEDVPNSADGAPA
6) TTVTSATIIQPNTTRESPTDWIEHTSADGRRYYHNKKTRQS
303
882
66
159
406
209
400
1012
154
204
440
249










Molecular Recognition Features






MoRF SequenceStartStop




1) SRHKRHKR
978
985