<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17407

Description pre-mRNA-processing protein 40A-like isoform X3
SequenceMANNPRFSGVQPLQPPIVGSVEPPRSFVAPMSSQFRQVVPAQQSQQFNPVPSQHFYPVGLGAPRMNVGLPHHHALQPQFSQSMQQFPPRPGQPGQPGHATLPSQAIPLPIAQPNLHITSEKPIPQINSQTPNSYSPVLGGPERPLTSSYTFASSSYGQPHTNFSASTQYQFTPQMHAPDISSGRQLGLSSESQGTATVAQYAKQPLVPTTVTSATIIQPNTTRESPTDWIEHTSADGRRYYHNKKTRQSSWEKPLELMTPIEMLTGTWSATLLRDCRSMSLTSPKLFGLGGREKADASTNWKEYTSPDGRKYYYNKVTKESKWSIPEELKLAREQVEKASFMGTQPDTFEIPLVSTTVPPSVVKAPSGGETSSSPAQGVASSPASEGHDVAAGDLKPPLLSETPASTVVASTTDENANGTQTLLNVAALSDAVPENSEAAVTIASTIHAPMENADNLSAEDVPNSADGAPAKVVEGVDAIEALEEVKKDEIGEKLNDIGLEAKSVDPEPMIYANKLEAKNAFKALLESANVGSDWTWDRAMRVIINDRRYGALKTLGERKQVFNEFLSQRKKQEAEERRIKLKKAREEFKQMLEESSELTSSTRWSKAVSMFENDERFKAVERDRERRDLFDNYLGELKEKERARAEEERKRNVMEYRQFLESCDFIKADSQWRKLQDRLEADERCSRLEKMDRLDIFMEYTHDLEKEEEERRKIQKEELRKVERKNRDEFRKLMEEHVTAGTLTAKTHWRDYCMKVKDLLAYTEVASNTSGSTPKELFQDVLEELEKQYHEDKTRIKDAVKLGKILLSSTWVLEDFKFAISKDFSPPISDVNLKLIFDELLERVREKEEKEAKKRKRLADDFFHLLSSIKEITASSKWEDCKQLFADSREFSSIGEESLCREIFEQYISQLKEQAKEHERKRKEEKAKKEKEREEKEKRKVKQRREKEEGREREKDEEDNIKKQRKRHQSSEDIVDENEKDRSRKSHGSSDHKKSRRHASAPESDDESRHKRHKRDHRNGSRRYGDHEELEDGEFGEDRQSW
Length1043
PositionUnknown
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.07
Grand average of hydropathy-0.988
Instability index55.22
Isoelectric point6.21
Molecular weight119066.51
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17407
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     368.49|      64|      65|     794|     857|       1
---------------------------------------------------------------------------
  560-  607 (31.90/12.79)	.......................KQ..VFNEFLSQ.RK.........KQEAEERriKLK...kareefK.QMLEESSELTS...STRWSK
  616-  655 (50.16/24.45)	ERFK...AVERDRER..RD........LFDNYLGELKE.........KE........RA......raeE.ERKRN.............VM
  656-  705 (65.46/34.22)	EYRQ..FLESCDFIK..ADSQW.RK..LQDRL.....E.........ADER..................cSRLEKMDRLD.IFMEYTHDL
  709-  766 (45.75/21.64)	EEER..RKIQKE...ELRKVER.KNrdEFRKLMEE........................hvtagtltaK.THWRDYCMKVKDLLAYTEV.
  767-  814 (62.25/32.17)	.............ASNTSGSTP.KE..LFQDVLEEL.E.........KQYHEDK..TR..............IKDAVKLGKILLSSTWVL
  815-  879 (78.27/42.39)	EDFK..FAISKDFSPPISDVNL.KL..IFDELLERVRE.........KEEKEAK..KRKrladdffhlL.SSIKE......ITASSKW..
  880-  932 (34.69/14.58)	EDCKqlFADSREFS.SIGEESLcRE..IFEQYISQLKEqakeherkrKEEK.AK..KEK...............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     166.64|      34|      69|     224|     257|       2
---------------------------------------------------------------------------
  224-  257 (66.64/44.57)	ESPTDWIEHT.SADGRRYYHNKKTRQSSWEKP..LEL
  258-  289 (37.11/21.31)	MTPIEMLTGTwSATLLR...D..CRSMSLTSPklFGL
  296-  329 (62.89/41.62)	DASTNWKEYT.SPDGRKYYYNKVTKESKWSIP..EEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.19|      16|      17|     933|     948|       3
---------------------------------------------------------------------------
  933-  948 (23.73/13.92)	EREEKEKRKVKQRREK
  953-  968 (22.26/12.49)	EREKDEEDNIKKQRKR
 1007- 1020 (18.20/ 8.52)	D.ESRHKRHKRDHRN.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     233.19|      36|      36|      42|      77|       4
---------------------------------------------------------------------------
    4-   37 (27.33/10.90)	......NP...RF...SgvQ...PLQPpiVGsVEPPRSFVA.PMSSQF....RQ
   42-   77 (66.61/37.24)	QQSQQFNP...VP...S..Q...HFYP..VG.LGAPRMNVGLPHHHAL....QP
   81-  113 (59.21/32.28)	QSMQQFPP...RP...G..Q...PGQP..GH.ATLPSQAIPLP...IA....QP
  115-  159 (37.64/17.81)	LHITSEKP...IPqinS..QtpnSYSP..V..LGGPERPLTSSYTFASssygQP
  166-  205 (42.40/21.00)	STQYQFTPqmhAP...D.iS...SGRQ..LG.LSSESQGTATVAQYAK....QP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.56|      27|      28|     425|     452|       5
---------------------------------------------------------------------------
  355-  385 (19.45/ 7.45)	.....ST.TVPPsvvkapsggetSSSPAQGVAS...SPAS
  389-  413 (33.46/19.02)	DVAA.GDlKPPL...........LSE...TPASTVVASTT
  425-  452 (41.65/30.53)	NVAAlSD.AVPE...........NSEAAVTIASTIHAPME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.74|      15|      30|     468|     482|       6
---------------------------------------------------------------------------
  468-  482 (24.73/13.89)	GAPAKVVEGVDAIEA
  499-  513 (27.00/15.80)	GLEAKSVDPEPMIYA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17407 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KEQAKEHERKRKEEKAKKEKEREEKEKRKVKQRREKEEGREREKDEEDNIKKQRKRHQSSEDIVDENEKDRSRKSHGSSDHKKSRRHASAPESDDESRHKRHKRDHRNGSRRYGDHEELEDGEFGEDRQSW
2) NFSASTQYQFTPQMHAPDISSGRQLGLSSESQGTATVAQYAKQ
3) NVGLPHHHALQPQFSQSMQQFPPRPGQPGQPGHATLPSQAIPLPIAQPNLHITSEKPIPQINSQTPNSYSPVLGGPERPLTSSYTFASS
4) SEAAVTIASTIHAPMENADNLSAEDVPNSADGAPA
5) TFEIPLVSTTVPPSVVKAPSGGETSSSPAQGVASSPASEGHDVAAGDLKPPLLSETPASTVVASTTDENANGTQTLLNVAALSD
6) TTVTSATIIQPNTTRESPTDWIEHTSADGRRYYHNKKT
913
162
66
437
348
209
1043
204
154
471
431
246










Molecular Recognition Features






MoRF SequenceStartStop




1) SRHKRHKR
1009
1016