<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17405

Description mediator of RNA polymerase II transcription subunit 13-like
SequenceMGQYPCWALGSISLYQVLHNPDEKIKLWFFLPGRHSSVVETAQSAVFRLEVTTSGIWLALGDSEEVAAALSQALRNCIQRKVFGLSYMRFGDVFSKYCPSQSDKIFSGSSLELMEGSWTEINGILAKHGYNSSSNGNDSSISRSSSDSDHMMNTAAGELEGDDDNLTCRQSGLSSNDHSENGPKLGSKRPRTGMTDSFGQVGTETNDLLQEAYKSDFVSMEVDNSAITGVANDQIGSHWDYDDDDIGMVMDIQTLLSEFGDFGDFFENDALPFGEPPGTAESQTLIFSAPDYGDVGTSPVGMMDVSDQMLLPGGFPSFESFDPPVPVAQEEYLGNTQEVTKNSMLSGLGSHTPASSTGEFNHIIKAEALMRFASEYGAVETPTSEFSSSICRSPYFLKSIKEENSNSSSSKYIYGATPPFSPYFNGSDEKTSMPMNSIPFLRRNDADAVIHSKNNYTHVESAKEPYEKRLLAVNSFPMSEGVTPSPFPNLNSANAVKSSLRKVAEGTLELAPFLQSMKTLLATDVECLMFQASMCRIRHTLLSSSRPMPIGLSRLTRSTGFNQLPGDQSTMTDNTSGKYEAKKKESMPLRIASDIDVALDGCLNAPIGVLRSVGVPKVPKSSNSPSMEVSPSLPRNSFNKEGVLSFGLMQPLQELLDGMALLVQQATSFVDLTLDGDCGDGPYGWLALQEQWKQGFSCGPSMVHAGCGGTLASCHALDIAGVELGDPLSADSDIKRVLKSAFGILDGPLSVTDWCKGHNHSVDAGSASDGFSANSSINECTDSSSTVMLSAAEPMNPSHYCAGRSSCLKDAVSSATGGATVDGTCQSISNQEIRTSEPCAWLRPTLFALPLPAILVGYQDDWLKTSASTLKLWEKAPLEPYSLQKPVTYNVICPDIDPLTSAAADFFQQLGTVYETCKLGSHSPQSLGDQMEIDSAKWSSSGFVLLDCPQSMRIESSNASLMGSISNYFFSLSNDWDLTSYLKSLSKALKGLKLSPYSSTNPRDGSCGPCMVIYVVCPFPDPTAVLQTVVESSVAVGSVILQSDRERSILHSQVGKALSCSEAVDEATISNVLVLSGFSIPKLVLQIVTVDAIFRVTSPSYDELVILKETAFTVYNKARRILRGSSNDMVQLSSLSSRSPSVLTQMSSPISGMLKDCVGPRISVHSLSREGDIEANLRTSA
Length1181
PositionKinase
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.195
Instability index49.61
Isoelectric point4.80
Molecular weight127169.45
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17405
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.17|      11|      25|     213|     223|       1
---------------------------------------------------------------------------
  213-  223 (19.82/12.12)	YKSDFVSMEVD
  241-  251 (21.35/13.64)	YDDDDIGMVMD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.36|      25|      42|     714|     740|       2
---------------------------------------------------------------------------
  714-  740 (36.17/28.90)	C....HALDiAGvELGDPLSADSDIKRVLKS
  755-  783 (41.19/23.63)	CkghnHSVD.AG.SASDGFSANSSINECTDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.90|      26|     114|     860|     886|       3
---------------------------------------------------------------------------
  837-  877 (41.50/24.34)	EPCAWLRP..tlfalplpailvgyqDDW...LKTSASTLKLWEKAP
  879-  924 (33.40/14.09)	EPYSLQKPvtynvicpdidpltsaaADFfqqLGTVYETCKLGSHSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     254.53|      42|      44|     408|     449|       4
---------------------------------------------------------------------------
  265-  301 (41.87/19.29)	FF....END.....ALPFG....EP.P..GTAESQTL..IFSAP..DYGdvG..TS........PVG.
  302-  341 (54.57/27.43)	MMDVSDQML......LP.G....GF.PSFESFDPPVP..VAQEE..YLG..N..TQ........EVTK
  344-  394 (37.15/16.27)	MLSGLGSHT.......PAS....STgEFNHIIKAEALmrFASEY....G..AveTPtsefsssiCRSP
  395-  422 (36.96/16.15)	YF...............LK....SI.......KEENSnsSSSKY..IYG..A..TP........PFSP
  423-  465 (47.05/22.61)	YFNGSDEKT.....SMPMN....SI.PFLRRNDADAVihSKNNYthVES..A..KE........P...
  466-  512 (36.92/16.12)	Y.....EKRllavnSFPMSegvtPS.PFPNLNSANAV.kSSLRK..VAE..G..TL........ELAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.98|      46|     332|     621|     682|       5
---------------------------------------------------------------------------
  621-  668 (67.85/34.84)	SSNSpSMEVSPSLPRNSFNKEGVLSfGLMQPLQELLDGMALLVQQATS
  956- 1001 (76.12/31.42)	SSNA.SLMGSISNYFFSLSNDWDLT.SYLKSLSKALKGLKLSPYSSTN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.38|      11|     122|     887|     898|       8
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  887-  898 (19.54/16.04)	VTYnVICPDIDP
 1012- 1022 (24.84/15.10)	VIY.VVCPFPDP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17405 with Med13 domain of Kingdom Viridiplantae
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