<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17402

Description heat shock 70 kDa protein
SequenceMASKNVGKAIGIDLGTTYSCVAVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPTVQSDMKHWPFKVVAGPGDKPMIVVQHKGEEKQFAPEEISSMVLIKMREIAEAYLGHAVNNAVITVPAYFNDSQRQATKDAGAIAGLNVIRIINEPTAAAIAYGLDKKGSRSGEKNVLIFDLGGGTFDVSLLSIEEGIFEVKATAGDTHLGGEDFDNRLVNHFAAEFKRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCFRDAKIDKSQVNEIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGIETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERAKTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIERLVQEAEKYKAEDEEVKKKVEARNSLENYAYNMRNTVKDEKFAGKLHPGDKQKIEKAIDETIEWLDGNQLAEADEFEDKLKELEGLCNPIVAKMYQGAGGDGPMGGGAEPSSGSSGAGPKIEEVD
Length647
PositionUnknown
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.06
Grand average of hydropathy-0.421
Instability index33.69
Isoelectric point5.35
Molecular weight70870.40
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17402
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.19|      51|     189|     170|     230|       3
---------------------------------------------------------------------------
  170-  230 (64.77/56.11)	GLNVIRIINePTaAAIAYGLDKKGS.RSGEKNVLIFDLggGTFDVSLLSIeeGIfevkATAG
  362-  413 (84.41/43.16)	GKELCKSIN.PD.EAVAYGAAVQAAiLSGEGNEKVQDL..LLLDVTPLSL..GI....ETAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.83|      16|      21|      13|      32|       4
---------------------------------------------------------------------------
   13-   28 (32.19/27.29)	DLG..TTYSCVAVWQNDR
   35-   52 (25.64/10.88)	DQGnrTTPSYVAFTDTER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     266.75|      83|     287|     250|     333|       5
---------------------------------------------------------------------------
  250-  333 (135.68/94.98)	EFKRK..HKKDISGNARALRRlRTACERAKRTLSSTTQTTIE..IDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCFRDAKID
  537-  623 (131.07/87.38)	EVKKKveARNSLENYAYNMRN.TVKDEKFAGKLHPGDKQKIEkaIDETIEWLDGNQLAEADEFEDKLKELEGLCNPIVAKMYQGAGGD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17402 with Med37 domain of Kingdom Viridiplantae
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