<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17401

Description U-box domain-containing protein 35
SequenceMVPHFPPDDSSAPIKSTAVAIDKDKNSPHAVRWAIDHLVISNPSIILIHVRHKSSTQQHQSGNDHGESGDHHHHSDGKELFMPYRAYCARKGIQLKEVVVEDNDVSKALLDYVNKNCIDSIVVGASTRNALTRKFKGYDVASGLLKSAPHFCSVYVISKGKIFSARTAPRPLINTVTPPKHPSGPSPTPTSGLPPPVPHEVHNGEENGATVTRSARSPWRTSGGHDRSIHLERAGSETPRVTTTRDRERTKSSPTNISMENIDLPYRSGAPRPSFGRDSHADDGDLLPGPMVMGSMDLSNQNLDFSIIPHSPKDPLARQSARDLEAEMKRLRLELKQTMDMYSTACKEAISAKNKAKELHQWKLEEARKFEEARLAEEAALAIAELEKAKCKAAIEAAEAAQRLAEKEAQRRKLAEIKAKRESEEKNRALTALTHGDIRYRKYAIEEIEAATEKFSQSMKIGEGGYGPVYKGILDHTPVAIKVLRPDAAQGRKQFQQEVEVLCSIRHPNMVLLLGACPEYGCLVYEYMNNGSLEDRLFRRGNSHPLSWRRRFTIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVTKISDVGLARLVPPSVANSVTQYHMTSAAGTFCYIDPEYQQTGKLTTKSDIYSLGIMLLQIITAKPPMGLAHHVQRAIQRQTFAELLDQTVTDWPMEEALVFAKLALKCAELRKKDRPDLATVIVPELNRLRELGK
Length726
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.06
Grand average of hydropathy-0.505
Instability index42.08
Isoelectric point8.98
Molecular weight80809.32
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17401
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.84|      26|      28|     358|     385|       1
---------------------------------------------------------------------------
  327-  352 (39.22/19.68)	EMKRLRLELKQTMDMY..STACKEAISA
  358-  383 (41.13/23.51)	ELHQWKLEEARKFEEA..RLAEEAALAI
  385-  409 (24.50/ 8.44)	ELEKAKCKAAIEAAEAaqRLAEKEA...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     229.83|      73|     179|      48|     126|       4
---------------------------------------------------------------------------
   48-  126 (114.72/86.35)	IHV.RHKSSTQQHQSGNDHGESGDHHHHSDGKELFMPYRAYCARKGIQlKEVVVEDNDvskaLL.........DYVNKNcIDSIVVGAS
  229-  311 (115.10/69.66)	IHLeRAGSETPRVTTTRDRERTKSSPTNISMENIDLPYRSGAPRPSFG.RDSHADDGD....LLpgpmvmgsmDLSNQN.LDFSIIPHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.99|      25|      49|     510|     536|       5
---------------------------------------------------------------------------
  510-  536 (41.07/29.93)	MVLLLGACPEYgcLVYEYMNNGS.LEDR
  562-  587 (39.91/21.89)	LLFLHQAKPEP..LVHRDLKPANiLLDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.13|      10|      28|     183|     192|       6
---------------------------------------------------------------------------
  183-  192 (21.04/10.56)	SGPSPTPTSG
  214-  223 (21.08/10.59)	SARSPWRTSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.17|      11|      28|     412|     422|       8
---------------------------------------------------------------------------
  412-  422 (18.68/11.32)	RKLA..EIKAKRE
  441-  453 (14.49/ 7.26)	RKYAieEIEAATE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17401 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSNQNLDFSIIPHSPKDPLARQSARDLEAEMKR
2) TAPRPLINTVTPPKHPSGPSPTPTSGLPPPVPHEVHNGEENGATVTRSARSPWRTSGGHDRSIHLERAGSETPRVTTTRDRERTKSSPTNISMENIDLPYRSGAPRPSFGRDSHADDGDLLPGPMVMGS
298
167
330
295










Molecular Recognition Features






MoRF SequenceStartStop




NANANA