<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17399

Description Mediator of RNA polymerase II transcription subunit 13
SequenceMPKDVVDLLASWYGLKGSKNAADIWKMIPSCLMWCIWLGRNERCFEDKRDVGISFVWLERNERCFEDKEDKERSVGELMDFFFSNLCLWAKTLPPGTAESQTLIFSAPDYGDVGTSPVGMMDVSDQMLLPGGFPSFESFDPPVPVAQEEYLGNTQEVTKNSMLSGLGSHTPASSTGEFNHIIKAEALMRFASEYGAVETPTSEFSSSICRSPYFLKSIKEENSNSSSSKYIYGATPPFSPYFNGSDEKTSMPMNSIPFLRRNDADAVIHSKNNYTHVESAKEPYEKRLLAVNSFPMSEGVTPSPFPNLNSANAVKSSLRKVAEGTLELAPFLQSMKTLLATDVECLMFQASMCRIRHTLLSSSRPMPIGLSRLTRSTGFNQLPGDQSTMTDNTSGKYEAKKKESMPLRIASDIDVALDGCLNAPIGVLRSVGVPKVPKSSNSPSMEVSPSLPRNSFNKEGVLSFGLMQPLQELLDGMALLVQQATSFVDLTLDGDCGDGPYGWLALQEQWKQGFSCGPSMVHAGCGGTLASCHALDIAGVELGDPLSADSDIKRVLKSAFGILDGPLSVTDWCKGHNHSVDAGSASDGFSANSSINECTDSSSTVMLSAAEPMNPSHYCAGRSSCLKDAVSSATGGATVDGTCQSISNQEIRTSEPCAWLRPTLFALPLPAILVGYQDDWLKTSASTLKLWEKAPLEPYSLQKPVTYNVICPDIDPLTSAAADFFQQLGTVYETCKLGSHSPQSLGDQMEIDSAKWSSSGFVLLDCPQSMRIESSNASLMGSISNYFFSLSNDWDLTSYLKSLSKALKGLKLSPYSSTNPRDGSCGPCMVIYVVCPFPDPTAVLQTVVESSVAVGSVILQSDRERSILHSQVGKALSCSEAVDEATISNVLVLSGFSIPKLVLQIVTVDAIFRVTSPSYDELVILKETAFTVYNKARRILRGSSNDMVQLSSLSSRSPSVLTQMSSPISGMLKDCVGPRISVHSLSREGDIEANLRTSAWDNSWQTTRTEGLSCESVRTGYFQEPAKPLSDDSSGGFMQGLSSAGSADAGSCSQLDGSESYGSGFSQQKTPPSLHCCYGWTEDWRWLVCIWTDSRGELLDSHVFPFGGISSRQDTKGLQCLFVQVLQQGCQILQACSSPDIGVAKPRDFVIVRIGSFFELEYLEWQKAINSIGGSEVKKWPLQLRRSVHDGIPASSNSTSLEQQELSLIQETLHYAKASGFIKGDLGKPAARKKLMGGQTLVDCSRGLLQWVQSISFVAISVDDHSLNLVSQADSSSPGGTQGGGGMGPSGYREVFKPVWSLGSTFASYILIPSPSMHFLPATPLQLPACLTTESPPLAHLLHSKGPAIPLSTGFVVSNAVPSMRKGYRSNLKEEWPSVLCISLIDYYGGTNIIQDMFVGGVNKQDGRSLSAEAKDFEIETHLVLESVAAELHALSWMTVSPAYLERRTALPIHCDMVLRLRRLLQFADKELSQQPNKLHL
Length1481
PositionKinase
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy-0.156
Instability index54.41
Isoelectric point5.34
Molecular weight160732.50
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17399
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     932.65|     233|     241|     509|     748|       1
---------------------------------------------------------------------------
  509-  747 (396.58/224.43)	QW.KQGF...SCGPSM.VHAGCGGTLA...SCHALDIAGV..ELGDPLSADSDIKRVLKSAFGILDG....PLSVT...DWCKGHNHSVDAGSA.S..DGFSANS...SINEC..............TDSSSTVMLSAAEPMNPSHYCAGRS.SCLKDA.......VSSATGGATVDGTCQSISNQEIRTSEP..CAWLR.PTLFALPLPAilvgYQDDW..LKT....SASTLKLWEKA..PLEPYSLQKPVTYNVIcpDIDPLTSAAADFFQQ.LGT....VYETC...KLGSHSPQSLGD
  755-  990 (283.27/145.76)	KWsSSGFvllDCPQSMrIESSNASLMG...S.....ISNY..FFS..LSNDWDLTSYLKSLSKALKGlklsPYSSTnprDGSCGPCMVIYVVCPfP..DPTAVLQ...TVVES..............SVAVGSVILQSDRERSILHSQVGKAlSC.SEA.......VDEATISNVLVLSGFSIPKLVLQIVTV..DAIFR.VT.....SPS....Y.DELviLKE....TAFTV..YNKArrILRGSS......NDMV..QLSSLSSRSPSVLTQ.MSSpisgMLKDCvgpRISVHSLSREGD
  998- 1225 (252.80/128.95)	..............SA.WDNSWQTTRTeglSCESVR.TGYfqEPAKPLSDDS........SGGFMQG....LSSAG...SADAGSCSQLD.GSE.SygSGFSQQKtppSLHCCygwtedwrwlvciwTDSRGELLDSHVFPF.......GGI.SSRQDTkglqclfVQVLQQGCQILQAC...SSPDIGVAKPrdFVIVRiGSFFELE........YLEW..QKAinsiGGSEVKKW........PLQLRRSVHDGI......PASSNSTSLEQQeLSL....IQETL...HYAKASGFIKGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.54|      15|      19|      36|      50|       2
---------------------------------------------------------------------------
   36-   50 (33.59/22.83)	IWLGRNERCFEDKRD
   56-   70 (32.95/22.25)	VWLERNERCFEDKED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.88|      30|      35|     178|     210|       3
---------------------------------------------------------------------------
  178-  207 (51.69/33.74)	FNHIIKAEALMRFASE..YGAVETPTSEFSSS
  214-  245 (49.20/23.59)	FLKSIKEENSNSSSSKyiYGATPPFSPYFNGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.54|      32|      44|     250|     284|       5
---------------------------------------------------------------------------
  250-  284 (55.08/39.38)	SMPMN....SIPFLRRNDADAVihsKNNYTHV.ESAKE..PY
  293-  331 (44.45/24.14)	SFPMSegvtPSPFPNLNSANAV...KSSLRKVaEGTLElaPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.71|      10|      34|     426|     437|       6
---------------------------------------------------------------------------
  426-  437 (10.61/12.90)	GVLrSVGVPKvP
  460-  469 (20.10/10.49)	GVL.SFGLMQ.P
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17399 with Med13 domain of Kingdom Viridiplantae
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