<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17346
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MELAYVCEWDKRPKSTHCPSIPLVCSWSCRNLVAFTTDLKSEDDDKDVSHMIHIIDTEHPWDVFSINSGHSEVISCLEWDQSGSRLLSADGDGQIRCWSMSDHLVNSWETNLSSSVDGDPIVALSWLHNGVKLALHVEMSGSTNFGEKFSRVKFTPSLILFGGKPMEGWLAVTVSGLVTVSLLKPGGALLTASESLCRLRGRVALADIAFTGGGNIVVAATDGSSSSPIQFYKVVVSVVSEKCRIDTELLPSLFLRCTTDPMRRDKYTAVTHLKFLTRENSEQVLLCASNQSGSIVECWSLRKEGLPVNNIFQHRSPVVGEKQPTILKWRILTTTSDLERVSAIALPKLPISISNTDLKVASDTKFCPGLGLALAFHDGSIQILHRLSLHTMGVFHGSTSSAQRPGDETAIKRQRTTGPALHFKALQFSLTSLALAGVDNHGKLYMLRVSPSMGQVLDMNTTLRHLLFLLEYCMVTGHDWWDVLLHVQPSMVHNLVEKLHEEYMRQNQALQQVLATRIVAVKASLCKLSTATAARACDFHAKLLLIAISSTLKSLLRPHVLNTPDKSPGDRLTEICAKNTDTDIDKVMINLKTEEFVLDGPPLQSLQQLIQWVGDFVLYLLANLPNQGSMVRPGFGFMRDGASLGMLREMLVMIRIWGLLKPGCLPTFTA |
Length | 670 |
Position | Tail |
Organism | Austrofundulus limnaeus |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata>
Ovalentaria> Atherinomorphae> Cyprinodontiformes> Rivulidae>
Austrofundulus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.037 |
Instability index | 37.49 |
Isoelectric point | 7.08 |
Molecular weight | 73919.68 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP17346
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 52.42| 14| 79| 18| 32| 1
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18- 32 (27.49/17.60) CPSIP..LVCSWSCrNL
97- 112 (24.93/11.23) CWSMSdhLVNSWET.NL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 166.37| 57| 476| 117| 186| 4
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117- 186 (76.72/101.11) DGDPIVALSWLHNGV.KLALHVeMSGSTNFGekfSRVKftPSlilFG....GKPMeGWLAvtvSGLVTV...SLLKPG
599- 663 (89.65/68.09) DGPPLQSLQQLIQWVgDFVLYL.LANLPNQG...SMVR..PG...FGfmrdGASL.GMLR...EMLVMIriwGLLKPG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 74.16| 22| 154| 202| 224| 5
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202- 224 (33.44/24.68) RVAlADIAFTGGGNIVVAATDGS
359- 380 (40.73/25.78) KVA.SDTKFCPGLGLALAFHDGS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 72.94| 22| 417| 43| 64| 6
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43- 64 (42.65/26.33) DDDKDVSHMIHIID....TEHPW.DVF
458- 484 (30.29/16.77) DMNTTLRHLLFLLEycmvTGHDWwDVL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 103.84| 33| 97| 425| 457| 10
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425- 457 (56.15/43.90) ALQFSLTSLALA....GVDNHGKLYMLRVSPSMGQVL
520- 556 (47.69/36.02) AVKASLCKLSTAtaarACDFHAKLLLIAISSTLKSLL
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