<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17280

Description Mediator complex subunit 13 like
SequenceMDKNFVRIGKWFVRPYEKDEKPVNKSEHLSCAFTFFLHGESNVCTSVEIAQHQPIYLINEEHIHMAQSSPAPFQVLVSPYGLNGTLTGQAYKMSDPATRKLIEEWQYFYPMVLKKKEESKEEDELGYDDDFPVAVEVIVGGVRMVYPSAFVLISQNDIPVPQSVASAGGHITVGQQGLGSVKDPSNCGMPLTPPTSPEQAILGESGGMQSAASHLVSQDGGMITMHSPKRSGKIPPKLHNHMVHRVWKECILNRTQSKRSQMSTPTLEEEPASNPATWDFVDPTQRVSCSCSRHKLLKRCAVGPNRPPTMSQPGFSAGPSSSSSLPPPASSKHKTTERQEKGDKLQKRPLIPFHHRPSVAEELCMEQDAPGQKLGLAGIDSSLEVSSSRKYDKQMAVPSRNTSKQMNLNPMDSPHSPISPLPPTLSPQPRGQETESLDPPSVPVNPALYGNGLELQQLSTLDDRTVLVGQRLPLMAEVSETALYCGIRPSNPESSEKWWHSYRLPPSDDAEFRPPELQGERCDAKMEVNSESTALQRLLAQPNKRFKIWQDKQPQMQPLHFLDPLPLSQQPGDSLGEPTTPMKMGLAPTMMICLLTFHSQMIWTMILAY
Length609
PositionMiddle
OrganismPapio anubis (Olive baboon)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Cercopithecidae> Cercopithecinae> Papio.
Aromaticity0.06
Grand average of hydropathy-0.552
Instability index73.26
Isoelectric point6.36
Molecular weight67548.21
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17280
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     252.33|      59|      93|     292|     352|       1
---------------------------------------------------------------------------
  187-  239 (71.88/32.37)	........CGM...PLT.....................PPTSP.EQailGESGGMQSAASHLVSQDGGMITMHSPKRSGKIP..PKLH
  242-  288 (54.34/22.21)	MVHRVWKECILnrTQSK.....................RSQMS.TP...TLEEEPASNPATWDFVDPTQRVS................
  292-  352 (98.95/51.96)	SRHKLLKRCAV..GPNR.....................PPTMS.QP...GFSAGPSSSSSLPPPASSKHKTTERQEKGDKLQkrPLIP
  387-  440 (27.16/ 7.14)	SSRKYDKQMAV...PSRntskqmnlnpmdsphspisplPPTLSpQP......RG.QETESLDPP........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     244.04|      75|      93|       8|      84|       2
---------------------------------------------------------------------------
    8-   84 (126.78/93.12)	IGKW.FVRPYEKDEKPVNKSE.HLSCAFTFFLHGESnVCTSVEIAQHQPIYLINEEHIHMAQS.SPAPFQVLVSPYGLnG
  102-  179 (117.27/77.08)	IEEWqYFYPMVLKKKEESKEEdELGYDDDFPVAVEV.IVGGVRMVYPSAFVLISQNDIPVPQSvASAGGHITVGQQGL.G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.17|      11|      14|     469|     480|       3
---------------------------------------------------------------------------
  469-  480 (16.02/12.67)	GQRlPLMAEVSE
  486-  496 (21.14/11.93)	GIR.PSNPESSE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17280 with Med13 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ECILNRTQSKRSQMSTPTLEEEPASNPATWDFV
2) ITVGQQGLGSVKDPSNCGMPLTPPTSPEQAILGESGGMQSAASHLVSQDGGMITMHSPKRSGKIPPKLH
3) KRCAVGPNRPPTMSQPGFSAGPSSSSSLPPPASSKHKTTERQEKGDKLQKRPLIPFHHRPSVAEELCMEQDAPGQKLGLAGIDSSLEVSSSRKYDKQMAVPSRNTSKQMNLNPMDSPHSPISPLPPTLSPQPRGQETESLDPPSVPVNPALYGNGLEL
249
171
298
281
239
455










Molecular Recognition Features






MoRF SequenceStartStop




NANANA