<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17100

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRSLLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILASLSNPQLRSQAEQCGTLIRSIPTMLAVHSEQLHKTGYPTVHAVVLLEGTMNLTGETQPLVEQLMMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYCHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCTKFLLQECSKQGLLSEASVTNLMAKRAADREHAPQLKSGENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTHGNEELAKAASVRALLFDISFLMLCHVAQTYGSEVILSESSSGAQVPFFETWMQTCMPEEGKILNPDHPCFWPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLYSENTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFGKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVTLVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASSRQKKRHREDIEDYISLFPLDDMQPSKLMRLLSSNEEDANVLSSPRSLGTSSEGLMLFCPDPSPAPHAPLSLPRALLTTTDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGSRGSILQFMPFTTVSELVKVSAMSSPKVVLAITDLSLSLGRQVAAKAIAAL
Length1023
PositionTail
OrganismFelis catus (Cat) (Felis silvestris catus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Carnivora> Feliformia> Felidae> Felinae> Felis.
Aromaticity0.07
Grand average of hydropathy0.032
Instability index47.25
Isoelectric point6.42
Molecular weight113660.04
Publications
PubMed=17975172

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17100
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     362.68|     100|     103|     602|     703|       1
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  602-  686 (122.22/79.20)	.....................IQKITDNIK.GKVCSLAV.CAVAWLVAH...................V.....RMLGLDEREKSLQMIRQLAGPLYSENTLQfyNERVVIMSS.ILEHMCADVLQQTATQIK
  687-  785 (144.67/87.53)	FPSTGVDTMPYWNLL.PPkrpIKEVLTDIF.GKV..LEK.GWVDSRSIH...................IfdtllHMGGVYWFCNNL..IKELLKETRKEHTLR....AVELLYS.IF...CLDMQQVTLVLLG
  788-  890 (95.79/55.47)	LPGLLTDSSKWHSLMdPP............gTALAKLAVwCALSSYSSHkgqassrqkkrhrediedyI.....SLFPLDDMQPS.KLMRLLSSNEEDANVLS..SPRSLGTSSeGLMLFCPD..........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     575.17|     199|     247|      78|     298|       2
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   70-  290 (301.82/285.33)	SQMVSYSS.................VLTAISKF...D.DFSRDL.C.......VQALLDIMDMFCDrLSC.HGKAEECIGlcRSLLS..ALHWLLRCTAASAERLREgLEAGTPAAGEKQLAMCLqRLEKTLSstknrallHIAKLEEASSWTAIEHSLLKLGEILASLSNPQLRSQAEQCGTL...IRSIPTM..LAVH.SEQLHKTGypTVHA....................VVLLEGTmnlTGETQPLVEQLMMVkrmqHIPTPLFVLEIWKACF
  291-  547 (273.35/200.19)	VGLIESPEgteelkwtaftflkipqVLVKLKKYchgDkDFTEDVnCafefllkLTPLLDKADQRCN.CDCtKFLLQECSK..QGLLSeaSVTNLMAKRAADREHAPQ.LKSGENANIQPNPGLIL.RAEPTVT........NILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLksfARKFINLneFTTHgNEELAKAA..SVRAllfdisflmlchvaqtygseVILSESS...SGAQVPFFETWMQT....CMPEEGKILNPDHPCF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17100 with Med24 domain of Kingdom Metazoa
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