<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17093

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRSLLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILASLSNPQLRSQAEQCGTLIRSIPTMLAVHSEQLHKTGYPTVHAVVLLEGTMNLTGETQPLVEQLMMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYCHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCTKFLLQECSKQGLLSEASVTNLMAKRAADREHAPQLKSGENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTHGNEELAKAASVRALLFDISFLMLCHVAQTYGSEVILSESSSGAQVPFFETWMQTCMPEEGKILNPDHPCFWPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLYSENTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFGKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVTLVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASSRQKKRHREDIEDYISLFPLDDMQPSKLMRLLSSNEEDANVLSSPTDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGSRGSILQFMPFTTVSELVKVSAMSSPKVVLAITDLSLSLGRQVAAKAIAAL
Length989
PositionTail
OrganismFelis catus (Cat) (Felis silvestris catus)
KingdomMetazoa
Lineage
Aromaticity0.07
Grand average of hydropathy0.029
Instability index46.40
Isoelectric point6.40
Molecular weight110143.99
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17093
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     353.54|      99|     103|     602|     703|       1
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  602-  686 (121.19/75.95)	.....................IQKITDNIK.GKVCSLAV.CAVAWLVAH...................V.....RMLGLDEREKSLQMIRQLAGPLYSENTLQFYNERVVIMSSILehmCADVLQQTATQIK
  687-  785 (145.06/83.65)	FPSTGVDTMPYWNLL.PPkrpIKEVLTDIF.GKV..LEK.GWVDSRSIH...................IfdtllHMGGVYWFCNNL..IKELLKETRKEHTLR....AVELLYSIF...CLDMQQVTLVLLG
  788-  883 (87.29/46.74)	LPGLLTDSSKWHSLMdPP............gTALAKLAVwCALSSYSSHkgqassrqkkrhrediedyI.....SLFPLDDMQPS.KLMRLLSSNEEDANVLSSPTDRS..MSSSL................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     595.91|     204|     247|      78|     298|       2
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   70-  290 (313.15/270.28)	SQMVSYSS.................VLTAISKF...D.DFSRDL.C.......VQALLDIMDMFCDrLSC.HGKAEECIGlcRSLLS..ALHWLLRCTAASAERLREgLEAGTPAAGEKQLAMCLqRLEKTLSstknrallHIAKLEEASSWTAIEHSLLKLGEILASLSNPQLRSQAEQCGTL...IRSIPTM..LAVH.SEQLHKTGypTVHAVVLLEGTMNLTGETQPLVEQLMMVKRMQHIPTPLFvlEIW.KACF
  291-  533 (282.76/199.18)	VGLIESPEgteelkwtaftflkipqVLVKLKKYchgDkDFTEDVnCafefllkLTPLLDKADQRCN.CDCtKFLLQECSK..QGLLSeaSVTNLMAKRAADREHAPQ.LKSGENANIQPNPGLIL.RAEPTVT........NILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLksfARKFINLneFTTHgNEELAKAA..SVRALLFDISFLMLCHVAQTYGSEVILSESSSGAQVPFF..ETWmQTCM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17093 with Med24 domain of Kingdom Metazoa
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