<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17087
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MTSSEQWGTFLHQCLMHRIDAAEFKNLSKLLLQKCPIGETPLLNVLLETRLATGIKWDPLLPLYVDCLCKMGQVQTSTVLHSLLKYSSIHDRPFSADSETAANPKKPSKCYTFMTDIRIIQDAMLSISTGHAPKSLAEAVGILAAIVDWMQAVVSWHNNHLDASQQAEGLLSSPDAVSLFESLGILLAALSGTTRGLDVLSSNSHEALKVKLGQALSGYLPLCMEVSLALRNRLDSLQKEFNLYGEPHSKSLEESMMDNVNVNALQFEASVMDGPIINSRAGLCIYINAMLAGRPLVDDTMMLNFLTNRYGGHNEVLIEEIITAAFDVLSNAMYRNESSRTMFLFRSFLVNKLPGFFAAMLAASVVSLPMELCISHALSRLDPRIFPSFSQMFSMQGSTVLSDVRQEFLFACASHKLIPESSIERLLGENPMQTVPVGHNKDHLVSQINMHPERTEQLIGEIESTEGNAGAIVGAITEVMFNLCNQKETMTLKNICNSLSRRPQALDVILLFRSPRQILQPLCALLDSWHWDEDQGESQPVYDEFGSILLLVLTFKYRYDLKPYDLGIGNNDSFVLKLLERGSCSQKLEDLNEKQNKNLASWIGALFIAEGISEETMSACSPQEFYLLVATLFDQSLGACEAGKLEFETLKGGFEYLLEPFLLPSLVVALAWLGNHIWESENDPSIPLKALHSLVSPSSISGEAKEIHRTVLNITARPLEEQLKDIRTRQQSRTDLKPILDALEPCLSFQRTGSCGRSELDGWTQAPGSLLGSIRSTFQALMLWSTSPDVSMTPSAYTHRQLIAGIRILGSVRVLGALIEELKLQTEAGNGPLTIDIAATMICSPLAESFAVEQSHYHPVDPSKEALPRCPILTLRDALLIQHENVAKMSEKDPLRAEIVVRLQRRVNALTAPTTQMPNLDMSNIIQNMQLGVEGPGQMDLEPSGAGPEVGEDDATNLTRIMGNAAAAVGMDGGVGQNMGGGLDTNIDDMLSAADMTVGNPEFLDLDMEGMF |
Length | 1012 |
Position | Tail |
Organism | Aspergillus steynii IBT 23096 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus>
Aspergillus subgen. Circumdati.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.017 |
Instability index | 47.78 |
Isoelectric point | 4.96 |
Molecular weight | 111200.44 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 ARBA:ARBA00003669
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP17087
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 154.33| 40| 42| 294| 335| 1
---------------------------------------------------------------------------
235- 267 (42.72/24.88) .....DSLQK..EF..NLYGeP.HSKSL.EESMMDNVNV...NALQF
294- 335 (64.36/48.37) RPlvDDTMML..NFLTNRYG.G.HNEVLIEEIITAAFDV.LSNAMYR
337- 380 (47.26/29.03) ES..SRTMFLfrSFLVNKLP.GfFAAMLAASVVSLPMELcISHALSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 75.35| 25| 42| 121| 146| 2
---------------------------------------------------------------------------
121- 146 (37.65/31.28) QDAMLSISTGHApKSLAEAVGIL.AAI
165- 190 (37.71/25.11) QQAEGLLSSPDA.VSLFESLGILlAAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 86.88| 25| 170| 558| 586| 3
---------------------------------------------------------------------------
558- 586 (40.00/37.32) RYDLKPydlgIGNNDSFVLKLLERGSCSQ
733- 757 (46.88/31.39) RTDLKP....ILDALEPCLSFQRTGSCGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 37.50| 10| 610| 80| 89| 8
---------------------------------------------------------------------------
80- 89 (18.68/11.55) LHSLLKYSSI
691- 700 (18.82/11.68) LHSLVSPSSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 90.67| 26| 27| 945| 970| 10
---------------------------------------------------------------------------
945- 970 (44.42/26.92) GAGPEVGEDDATNLTRIMGNAAAAVG
974- 999 (46.24/28.31) GVGQNMGGGLDTNIDDMLSAADMTVG
---------------------------------------------------------------------------
|