<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17062

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSDRASSVSLRAGPPSPSSPAAGSLKETQPSIPVSDQIPQTPTSPPLMSVSAQNYASNFTSSQASPNQQTTSQPANVSSPPSSAPMSTQPSQQPVVGPPQSFPTPASSVSGQFPGPSSADDADHADKSVSSAMPDAAALTDASTPHADNRRTDHERQLGGPGDAMDIDTDGALGRISSLDSLQKEFSSAYHLCKSSHVTPGPDPSIDLVSLYGLGPVAKSVARMDPITGEKINRLRKSYEGKLKGLGLAGRNKPVKQEPGAPGGLRHMTLWPEEEWQNQKVYGKDIKIADMDSALHNLQMKAMRMEPGAVPNNDYWEDVLGHEKPSKHGGAEAGKKTTAAPSAPSGARGPNSANGTPTADADRNRPSRGRKRHYDENSFVGYGEGFADDDDEGAFNSNGEGVGKKKRKKDHVSKISTPHPDRGGSYGVGIYGIGAR
Length436
PositionHead
OrganismAspergillus candidus
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
Aromaticity0.05
Grand average of hydropathy-0.825
Instability index46.07
Isoelectric point6.64
Molecular weight45775.82
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364151

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17062
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     192.44|      43|      44|     112|     154|       1
---------------------------------------------------------------------------
   15-   64 (46.10/15.43)	.PSPS.S.PAAGS..........LKETQPS..IPvsDQIPQTPTSPPlmsvSAQNYASNFtsSQA
   65-   94 (49.13/16.89)	SPNQQ.T.TSQPA..........N..VSSP...P..SSAPM...STQ....P.......S..QQP
  115-  159 (68.86/26.40)	GPSSA.D.DADHA..........DKSVSSA..MP..DAAALTDASTP....HADNRRTDHerQLG
  160-  207 (28.35/ 6.87)	GPGDAmDiDTDGAlgrissldslQKEFSSAyhLC..KSSHVTPGPDP....SID...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     189.10|      45|      46|     340|     385|       2
---------------------------------------------------------------------------
  307-  338 (49.45/22.89)	....P.GAV.PN..NDYWEDVLGHEKPS....KHGGA.EA...G.KKTT
  340-  385 (76.49/43.17)	APSAPSGARGPNsANGTPTADADRNRPSRGRKRHYDE.NSF.VG.YGEG
  387-  434 (63.16/31.30)	ADDDDEGAFNSN.GEGVGKKKRKKDHVSKISTPHPDRgGSYgVGiYGIG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17062 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GFADDDDEGAFNSNGEGVGKKKRKKDHVSKISTPHPDRGGSYGVGIY
2) LHNLQMKAMRMEPGAVPNNDYWEDVLGHEKPSKHGGAEAGKKTTAAPSAPSGARGPNSANGTPTADADRNRPSRGRKRHYDENSFVGYG
3) MSDRASSVSLRAGPPSPSSPAAGSLKETQPSIPVSDQIPQTPTSPPLMSVSAQNYASNFTSSQASPNQQTTSQPANVSSPPSSAPMSTQPSQQPVVGPPQSFPTPASSVSGQFPGPSSADDADHADKSVSSAMPDAAALTDASTPHADNRRTDHERQLGGPGDAMDIDTDGALGRISS
385
295
1
431
383
178










Molecular Recognition Features






MoRF SequenceStartStop




1) GSYGVGIYGIGAR
2) KDHVSKIST
424
409
436
417