<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17044

Description Uncharacterized protein (Fragment)
SequenceMSQQRMNYPSGGTSQNVINIDNIEVVRSRMIQVNDAQSEFLANLSASDDPTSLNWITFLNKINTFLSKHTGLSNTFIESTLRKIMLYPKEAPPVELEQIFNTLLRTKQIPEIENLEQEIKQEISIQENLLNLELELKKNLNDIDDDNKWDKLFDEWDKRYKEHDYIASQSSIICENILGDNNNLKRRLEEDTIDLDKESRDDVENVEDLTIEKVLAYMSSGIQEGKGPIPF
Length231
PositionHead
OrganismRhizophagus irregularis
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Glomeromycotina> Glomeromycetes> Glomerales> Glomeraceae> Rhizophagus.
Aromaticity0.06
Grand average of hydropathy-0.655
Instability index65.08
Isoelectric point4.51
Molecular weight26752.66
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17044
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.47|      14|      16|      85|      98|       1
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   85-   98 (26.68/17.09)	MLYPKEAPPVE.LEQ
  103-  117 (19.79/11.16)	LLRTKQIPEIEnLEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.46|      18|      46|     125|     142|       3
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  125-  142 (29.02/17.21)	IQENLLNLELELKKNLND
  173-  190 (31.44/19.19)	ICENILGDNNNLKRRLEE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17044 with Med8 domain of Kingdom Fungi
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