<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17043

Description Uncharacterized protein
SequenceMQQQDGLSIIFYPTFPSTRKRLHIFTWPTKYETKVHHRGIKYPDYSLISSSQQHQQQQEEEKEKKVYYQQQEEITEQQQQQQQQQQQQQQQQAVQNDDIQEEGNDCVMAGNDGFSKVPHELMMMIMNDLEVTDIIALSMVNRKLRAHTQDNYLWKQILIKKYGETTLKDYNNRLLSSSNPRKGKWKCKNKQIPSVTNWQKVYMSLSTVKIKTKTAFSRGRPGTFYRYRDFDIKKDTEPCNNKLRQKQRCFDIEMTISNVPPGTYDVIWRMRVDKFPEKPVITFSTDIWLRHDIYLSSYEREAKFKYSPDPEELAKAYDKGWFHFRLPYQIEIAKIEHSDDRRYQVHTGIYCNTEKVNKSSSVKGPFSVDYVCLRPHIPYNHCPNDTDLNNINEGETIYDNDYYNSVDEGCNFNVIDETISEDKSDDKKKRESIKSLIKHKKRLSKILCL
Length449
PositionTail
OrganismRhizophagus irregularis
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Glomeromycotina> Glomeromycetes> Glomerales> Glomeraceae> Rhizophagus.
Aromaticity0.10
Grand average of hydropathy-0.994
Instability index51.24
Isoelectric point8.67
Molecular weight53336.58
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17043
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.94|      17|      23|      42|      64|       1
---------------------------------------------------------------------------
   42-   58 (33.07/13.29)	YPDYSLISSSQQHQQQQ
   68-   84 (32.87/21.38)	YQQQEEITEQQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.29|      13|      18|     260|     273|       2
---------------------------------------------------------------------------
  260-  273 (23.43/23.05)	PPGTYDV.IWrMRVD
  279-  292 (21.86/15.03)	PVITFSTdIW.LRHD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.07|      16|      18|     298|     315|       4
---------------------------------------------------------------------------
  308-  324 (26.55/16.35)	PDPEELAKaYDK.GWFHF
  327-  343 (23.53/13.69)	PYQIEIAK.IEHsDDRRY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.96|      18|      20|     163|     182|       5
---------------------------------------------------------------------------
  163-  182 (25.36/21.37)	GETTLKdyNNRLLSSSNPRK
  183-  200 (35.60/22.05)	GKWKCK..NKQIPSVTNWQK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17043 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) YPDYSLISSSQQHQQQQEEEKEKKVYYQQQEEITEQQQQQQQQQQQQQQQQAVQNDDIQEEGNDCVMAGN
42
111










Molecular Recognition Features






MoRF SequenceStartStop




1) IKYPDYSLI
2) LSIIFYPT
3) SLIKHKKRLSKILCL
40
7
435
48
14
449