<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17039

Description Uncharacterized protein
SequenceMAQQQLQKYELTPPKNLVRLHKESIELGFPDFYPPKSGQDEDQMTEENVKKGFIDSPFVQNEHFSAHDVIFDELKKPDTLKNLGDFMTDVMKRKNETTFQGSSQFMGPTIVWVTVEERDKWLRDLAGNVPLKILARSVPKGVDGKDLLESVTLYRVPLARATWFTKVVGINKIIQRGNTDYTKEWTSIFYHFIRDQSLSHDPDKWRYSILLAKWQFDEQLLDQRLLRFTLEQLDEADHCQTPMWLWLVQQFLSEFQRSRTLMRLLIEIIIKKLQDIHQHPHIIIKLELVVKLLKNMLHTLFITTPDMFVFPVCWNTYKDLLRVVLVDDDSKTDPPNLKHQRERYFEAVRSRNEIFDDKKINPLGMSNARDALDSRMISILDKITYRIDYHNITAEYFRTNSNFQMMEREVSRHIHTLCRWTITPFREGDFRAYSVSTILDIWKNGVSDVKEKLERETIIQSSLVEFLDIYPFGVNGLNEREESEAIARLFGVLTKNGHFSYQRYLQRLIARGDVRPEKRTTERSLRHLRYVKWFAIYETDLHDLNHSINQRWHILYGINSKDTSDKNTIDTLSNIVSEKLPNVFSPKAKDMNAPIVDDPGSDFNCLINFDDSSLEFIQNATKFCQFRVVQEFLIPSVKRFVQNTPIDDTNWKSLAEPGSSLLNARQLATIVQFIELTKDYSSLLELIIWVLENSMERTLFPLIVDTIKRYEMIWDAMGKSDGVFDVLMKKNDQLREKRATEICIVKYLSGVIQDPEKKSKLEHDYSQFPTKSPLSVTISRNRDRLGQDVKNLLNRTRGFELSIASNIDSRWFQSDSVDVYLHAILESCTDVIHRHLQNYSEWTDARKLLDVIGDLLKEVGDRTTDGFDAVFSKKWLNYYIRADDDDSLLRQDRFLIFFTVLVVRHLVKIETILEHLVEKNLIRFSDKLLNKKQLDSNEIIECRNLAILLRIFLIHKNVSSGIPLTTMEIQRLQFICESFINNNDFTIISNVFQKLAIIESSLGSNDDLAIELQQLRMDFSQVYWFKQLCIANIDNVYDRFVKGTKKQNNSKEVKKLMIEIVRSGLGNFSYDNDVMNGYSSSLCFKNLERIFSTVNLWNIQKSRIEFFMCMDQIMLLDSSSNGSLHSNMELDGDLIMGGSEEDLNNIKSRVIEYFWEELVLKGNNDCLIISHIIRGIREDVAAELLEHGLTVLKRCGELIIGIEEVFRALLLSVRDNKKEFSEALINQIQKIIDENKDHTFVPCIMTRIKLFVLVANVLAARVTAVVTTNSIEFANRVPEYNLIMKWVVTLINLLCSERIHQNGGGADNFDLILDIVSFLIDEMGKIPRAIVVAELKVNRYHFNIPVIWSNRIKRVLPLNIPKETLGRLKHELDAWQLIEGIGENDDLNNSAIDLSWYDAKFYQKPSKRLKRSDEYEDYNLDFNKKYNEENGHLEP
Length1435
PositionKinase
OrganismRhizophagus irregularis
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Glomeromycotina> Glomeromycetes> Glomerales> Glomeraceae> Rhizophagus.
Aromaticity0.10
Grand average of hydropathy-0.313
Instability index38.61
Isoelectric point5.98
Molecular weight167454.04
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17039
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     289.59|      96|     419|     550|     676|       1
---------------------------------------------------------------------------
   12-   70 (80.27/34.64)	TPPKNLVRLHKESIELGFPDFYPPKSgQD......EDQMTEENVKKGFIDS..PFVQN.EHFSAHDVI.......................................
  563-  667 (152.40/135.66)	TSDKNTIDTLSNIVSEKLPNVFSPKA.KDmnapivDDPGSDFNCLINFDDSSLEFIQNaTKFCQFRVVqeFLIPSVKRFVQ.NTPIDDTNWKSLAEPGSSLLNARQL
  884-  934 (56.93/18.87)	................................................DDDSL.LRQD..RFLIF.....FTVLVVRHLVKiETILEHLVEKNLIRFSDKLLNKKQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.44|      28|     365|     317|     356|       3
---------------------------------------------------------------------------
  317-  344 (47.71/23.27)	YKDLLRV...VLVDDDSKTDPPNLKHQRERY
  680-  710 (37.62/15.13)	YSSLLELiiwVLENSMERTLFPLIVDTIKRY
  747-  768 (35.11/28.73)	Y...LSG...VIQDPEKKS...KLEHDYSQF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.51|      56|     656|     130|     186|       5
---------------------------------------------------------------------------
  130-  186 (93.68/54.94)	PLKI.LARSVPK.GVDGKDLLESVTLYRVPLAR...ATWF..TKV........VGINKIIQRGNTDYTkEWT
  773-  843 (74.83/39.67)	PLSVtISRNRDRlGQDVKNLLNRTRGFELSIASnidSRWFqsDSVdvylhailESCTDVIHRHLQNYS.EWT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.50|      32|     842|     467|     553|       6
---------------------------------------------------------------------------
  518-  552 (52.89/111.85)	KRTTERsLRH.LRYVKWF.AIYETDlhDLNHS.INQRW
 1362- 1396 (46.60/ 8.23)	KETLGR.LKHeLDAWQLIeGIGEND..DLNNSaIDLSW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.81|      25|      26|     434|     458|       7
---------------------------------------------------------------------------
  434-  458 (42.45/31.17)	SVSTILDIWKNGVSDVKEKLERETI
  462-  486 (43.36/32.02)	SLVEFLDIYPFGVNGLNEREESEAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.59|      19|     662|      71|      96|       8
---------------------------------------------------------------------------
   71-   96 (25.82/31.32)	FDELKKPDtlknlGDFmtDVMKRKNE
  714-  732 (36.78/22.03)	WDAMGKSD.....GVF..DVLMKKND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.51|      12|     662|     234|     245|       9
---------------------------------------------------------------------------
  234-  245 (25.01/17.18)	DEADHCQTPMWL
  253-  264 (20.51/12.72)	SEFQRSRTLMRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.25|      31|     929|     267|     297|      10
---------------------------------------------------------------------------
  267-  297 (51.88/35.11)	EIIIKKLQDIHQHPHII..IKLELVVKLLKNML
 1157- 1189 (46.37/30.56)	ELVLKGNNDCLIISHIIrgIREDVAAELLEHGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.82|      14|      26|    1279|    1292|      11
---------------------------------------------------------------------------
 1279- 1292 (25.36/12.21)	EYNLIMKWVVTLIN
 1308- 1321 (23.47/10.83)	NFDLILDIVSFLID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.77|      13|      25|     975|     987|      15
---------------------------------------------------------------------------
  975-  987 (24.40/14.24)	ICESFINNNDFTI
  998- 1010 (21.37/11.56)	IESSLGSNDDLAI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17039 with Med12 domain of Kingdom Fungi
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