<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17038

Description Uncharacterized protein
SequenceMKYNQSNGVINSPAIPSISIMFFAYNLVQTRPVMTDDMAVEYLEKLQHIQVSCDHEFYVELWMSALTGLAEECDKTSTGRVQHTLLWKSFVLVKLPSLIEKLELKKSNKFKNGNLLYSEENKYDCHECVINQLFGFKGLINACNQLVEDDIFQAADITVDILRVCLNRKLVRKEFVNRFLELEYEIDGGDTVGLTAGNILDDPSRQIIDHLVSTATTSFLHQESRVETIFKLMSEWSTKLEVAPLATLCRSLMDVPTLLDIIHLYRHPSEFISSLERLCNTWVSKADSKESLLHDYENFGTIFLFLISVIDRYEFHKNIKDVLHDDEGFCYKWLIQSGSTYDIDSLDQEKSIITRLVSTLSDASQEIPEDLIRISPRSLIELSPTIFKEALKKVVTEDIEIAMINLEPLFTHFVKPHMSYALIGVCQSLCDDILFKGKSSISFKVLNRLILEEAFPNSIIKLIGNKLLSIFDIISENGSLPSIEDTENIIRNKIAKIMMVPNWRNTKHPAEKLYYRFKMMFKSIIYGGRHKPSLIYEILLSENYFNNDINTEYEYITGNGGAANNLFDEFIINPSSWLGPHHLDIELFRNCLEINGPRTFVDLIVEEVLSAGKKGMGIRAAELGASLLTLPIYYTWNEYLHPKTLIKIFFMDFLPSILEKKIDMYTQSYSIGIMTLSILMMIKKDTQNIGGVDVSIDEIVGINNNVDGTNDILMMDAIISEERVGSMEGVGGTKVEIEDFTKFVLSIFKQDRDNADSDNIDSKVIQNGSKKIDDKVKNESEPKLINGPAKGFIDALLIHEDIVPELKSLVNK
Length812
PositionTail
OrganismRhizophagus irregularis
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Glomeromycotina> Glomeromycetes> Glomerales> Glomeraceae> Rhizophagus.
Aromaticity0.09
Grand average of hydropathy-0.070
Instability index39.85
Isoelectric point5.09
Molecular weight92426.41
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17038
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.41|      43|     189|     564|     607|       1
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  131-  181 (55.72/33.08)	NQLFGfKGLINACNQLVEDDIfqaaDItvDILRVCLNRKLVRkEFVNRFLE
  564-  606 (79.70/56.95)	NNLFD.EFIINPSSWLGPHHL....DI..ELFRNCLEINGPR.TFVDLIVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.28|      18|     139|     197|     214|       6
---------------------------------------------------------------------------
  197-  214 (33.07/24.80)	GNILD....DPSRQIIDHLVST
  338-  359 (26.22/18.03)	GSTYDidslDQEKSIITRLVST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.20|      16|      17|      40|      55|       9
---------------------------------------------------------------------------
   40-   55 (28.87/18.95)	VE.YLEKLQHIQVSCDH
   59-   75 (24.33/14.93)	VElWMSALTGLAEECDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.52|      38|     397|     360|     399|      11
---------------------------------------------------------------------------
  360-  399 (56.17/46.29)	LSDASQEIPEDLIRISPRSLIELSPTIFKEALkkVVTEDI
  765-  802 (63.35/45.62)	IQNGSKKIDDKVKNESEPKLINGPAKGFIDAL..LIHEDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.91|      16|     558|      86|     101|      13
---------------------------------------------------------------------------
   86-  101 (28.72/22.00)	LWKSFVLVKLPSLIEK
  645-  660 (29.19/22.49)	LIKIFFMDFLPSILEK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17038 with Med5 domain of Kingdom Fungi
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