<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17033

Description Uncharacterized protein
SequenceMMLQANTGINLSQSNVGINIQNARPPPNNMLAQMLAANKINMMAQNVTAANQLFPGVNPLLAAQAQAQVQAQSNAMLAQSNSAIVAAKPTLTQASSIGIPNSTFRPSSQGQQQSNTQTNPNMGHSSSSTSVTQTNLAVLNEKEAQEARNQIATLDARAKERRIQYHEIHDLTDDEKSKIMEKLKELQPMYHEVDKVLPYFWHYTKSSQGTYRLLGMKYMIEDQLKALPDKFLLRLELVDSLLQQFRKYFVFVESRRRGIVDTPGLNNVNPVLPPQQRPQPQVENIIQPRINPSDLKLPKRDNSGPGGPGTKKRRQSSVDGEQPSKKAASSKLPDVMIIDPPSKSAEANATVPSHAGGNSIIIITDDNVKSEEQQLQKNLPGESSQEGGVNKNTISLPLKDDVSEELQKNYIDSDVSMEGVRKQGQRLVIKSREYLKSLQHNPARHRRPIIEGFKPSNLTLSQYDIGNMFALYNTA
Length475
PositionTail
OrganismRhizophagus irregularis
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Glomeromycotina> Glomeromycetes> Glomerales> Glomeraceae> Rhizophagus.
Aromaticity0.04
Grand average of hydropathy-0.653
Instability index54.08
Isoelectric point9.37
Molecular weight52643.96
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17033
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.12|      28|      29|     330|     357|       1
---------------------------------------------------------------------------
  296-  328 (28.11/11.76)	.KLPKRDNS.GPggPGTKKRR..QSSVdgeqP...SKKAA
  330-  357 (49.55/25.46)	SKLPDVMII.DP..PSKSAEA..NATV....P...SHAGG
  359-  388 (24.46/ 9.43)	S....IIIItDD..NVKSEEQqlQKNL....PgesSQEGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.89|      29|      29|       2|      30|       2
---------------------------------------------------------------------------
    1-   29 (54.16/31.77)	M...M........LQANTGINLSQSNVGINIQNARPPPNN
   30-   59 (41.35/22.65)	MlaqM........LAANK.INMMAQNVTAANQ.LFPGVNP
   60-   89 (20.38/ 7.73)	L....laaqaqaqVQAQSNAMLAQSNSA..IVAAKP....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.42|      18|      29|     389|     409|       3
---------------------------------------------------------------------------
  389-  409 (25.43/21.12)	VNKNTISLPLKddvSEE....LQKN
  420-  441 (25.99/13.47)	VRKQGQRLVIK...SREylksLQHN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.80|      26|      29|     217|     244|       4
---------------------------------------------------------------------------
  217-  244 (38.42/27.41)	KY..MIEDQLKALPDKflLRLELVDSLL..QQ
  247-  276 (36.38/19.79)	KYfvFVESRRRGIVDT..PGLNNVNPVLppQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.08|      16|      18|     100|     115|       5
---------------------------------------------------------------------------
  100-  115 (30.06/18.70)	PNSTFRPSSQGQQQSN
  120-  135 (29.02/17.80)	PNMGHSSSSTSVTQTN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17033 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SSIGIPNSTFRPSSQGQQQSNTQTNPNMGHSSSSTSVTQTNLAVLN
2) TPGLNNVNPVLPPQQRPQPQVENIIQPRINPSDLKLPKRDNSGPGGPGTKKRRQSSVDGEQPSKKAASSKLPDVMIIDPPSKSAEANATVPSHAGGNSIIIITDDNVKSEEQQLQKNLPGESSQEGGVNKNTISLPLKDDVS
95
262
140
403










Molecular Recognition Features






MoRF SequenceStartStop




NANANA