<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17009

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMDAAVAELEWRVMETLKASEERGDPPLVRAIEAGRCVGVTAGPSTELGQVLVSLLCFRNNTPSLWKLLDQAIHARLLSPLHILALLTSRVIPHRRAQPEAYRLYLELLGRYGVSLSLEEFGSRRDKITKSIDEALLLSHSYGIDKLDFGQAVSFFLLSVITNLMDSILEDLGIKFLSVERPTNLYANEPYRDLDIDSKRNMNDKMQEHREQLRKTNILMALEVVEKITADKKNKVFFRLIHLNMPMKFNSLMERLQLIEVHRSTSQSLISINHVLVRLVSNIREVVNGEYKLNRHQVLGLLIDSKFGGPTSYYYGLGTNRSNSWISFDLLMENAMDGKHLHAISVVEILTDMTKTLQMVNQACWQETFMALWISALRLVERDREPWEGPIPHLDARLCMLLSIVPLVIVSIVKEELDTAFDKSNYEQSILINKPTSRRNGLVSSLQLLMQYTRLLSPPPSVTNAANNAAAKAAKFIAHFKNESSCIGSSNKKGASPKAVGSMIHLIVEACIARKLIDTSAYFWPGYVVQSATTKNFMSTEESPWSAFMGGAQLTRSLRNALMTTPASSVGELEKLYYTAITGSEEEKSAAAKILCGASLIRGWNIQEHAVHMVVKLLTTPIPGVSGPEICSHLIGHMPMLSAILFGACSVEAIHIISLYGLVPEVAAALMPLCEAFGSVPPQPNHRPSAFDETSVYSVFSCAFLFLLRLWKFYKPPQEHRIAGRGGTVRLEVTLDYLMLLRNHRIAVKNSIDKDKGNNSAASPGQPVYIDSFPKLGTWYLQNKACIASTLSGLCSKSPVHLVANKILNMICSKMSNGRNIAGNPSSTSGSSISESPVSAAEDAYQRPLLPAWDILEAVPFVLEAVLTACANGRLSSRDLVTGLRDLADFLPASLATIVSYFSAEITRGIWEPVAMNGDDWPSPATNLLLVESEIREILASVGVTLPKCYGGGKVPMLPLPMAALVSLTITFKLDKSLEYIHAVVGQALENSSAGSPWPTMPIIGALWAQKVRRWHDFIVLTATRSPFTRDKEAVAQLIRSCFSSFLGNGASQCGAIGLLGQSISIQGLRLPLAPGFLYLRSCRSFHDTHFVNNVILKLVIEWTNELVVNQSCTEPSARLLSGKSSFAAAALAVRSVATLGTSLLCVAGGPLLVQVLYEETLPAALLSWEFSQATGPAAAKIRLLEGYAMAYMLVLSGAFIWGLRKTFPGCSSFSSSHSRAVGMHMEFVAGVLEGEVSVGCDPVTWRTYVSCLLGLLVRFVPSWIPEIRKGTLRKLAAGLRRWNEWELALALLERAGPASMELVMESIL
Length1308
PositionTail
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.08
Grand average of hydropathy0.138
Instability index47.73
Isoelectric point8.42
Molecular weight143713.29
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17009
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     405.66|     139|     377|     673|     932|       1
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  466-  671 (196.12/77.66)	NNAAAKAAK..FIAHFK.......NESSCIGSSnKKGASPKavgSMIHLiveacIARKLID.TSAYFWPGY.VVQSATTKNFMSTEESPWSAfmggaqltrslrnalmttpassvgeleklyytaitgseeeksaaAKILCGASLIRGWNIQEHAVHMVVKLLTTPIPG.VSGPEICSHLIGHMPMLSAilfgacsveaihiiSLYGLVPEVAAALMP
  757-  907 (209.54/269.59)	NNSAASPGQpvYIDSFPklgtwylQNKACIAST.LSGLCSK...SPVHL.....VANKILNmICSKMSNGRnIAGNPSSTSGSSISESPVSA............................................AEDAYQRPLLPAWDILEAVPFVLEAVLTACANGrLSSRDLVTGLRDLADFLPA..............SLATIVSYFSAEITR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     212.32|      66|      70|     998|    1067|       2
---------------------------------------------------------------------------
  998- 1067 (109.59/88.42)	PTMPiiGALWAQKVRRWHD..FIVLTATRSPFTRDKEAVAQliRSCF..SSFLGNGASQCGAIGLLGQSISIQG
 1071- 1140 (102.73/70.78)	PLAP..GFLYLRSCRSFHDthFVNNVILKLVIEWTNELVVN..QSCTepSARLLSGKSSFAAAALAVRSVATLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.51|      20|     377|      58|      79|       3
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   58-   79 (34.07/32.83)	RNNTPSLWKLLDQaiHARLLSP
  438-  457 (36.44/27.27)	RNGLVSSLQLLMQ..YTRLLSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.23|      44|     295|      80|     126|      11
---------------------------------------------------------------------------
   80-  126 (70.52/45.58)	LHILAL.LTSR.......VIPHRRAQpeaYRLYLELLGRYGVSLSLEEFGSRRDK
  371-  422 (64.72/34.84)	LWISALrLVERdrepwegPIPHLDAR...LCMLLSIVPLVIVSIVKEELDTAFDK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17009 with Med33 domain of Kingdom Viridiplantae
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