<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17006

Description Luminal-binding protein 4
SequenceMARPMRNWVVLGLLLAGCLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAAVNPERTIFDVKRLIGRKFEDKEVQRDMKLVPYKIVNKDGKPYIQVKIKDGETKIFSPEEISAMILTKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRRECERAKRALSNQHQVRVEIEALYDGMDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKHQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRMLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVRAEDKASGKSEKITITNDKGRLSQEEIDRMVKEAEEFAEEDKKVKEKIDARNQLETYVYNMKNTINDKDKLADKIENDEKEKIDAALKDALEWLDENQDGQKEDFEEKLKEVEAVCNPVISKVYQRSGGAPGGGSDSSDDDSHDEL
Length663
PositionUnknown
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.06
Grand average of hydropathy-0.479
Instability index27.35
Isoelectric point5.19
Molecular weight73397.54
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17006
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.49|      20|      32|     548|     567|       1
---------------------------------------------------------------------------
  548-  567 (31.42/17.86)	VKEAEEFAEE.DKKVKEKIDA
  582-  602 (28.07/15.19)	INDKDKLADKiENDEKEKIDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.47|      17|      21|      64|      81|       2
---------------------------------------------------------------------------
   64-   81 (28.11/23.78)	NR..ITPSWVAFtDTERLIG
   86-  104 (26.36/16.79)	NQaaVNPERTIF.DVKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.69|      31|     243|     380|     421|       3
---------------------------------------------------------------------------
  177-  221 (39.16/17.26)	PAYFNDaqRQATKdaGIiaglnvariiNEPTA....AAIAYG.LDKKGGE
  380-  415 (47.53/33.82)	KDYFDG..KEPNK..GV..........NPDEAvaygAAVQGGiLSGEGGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.38|      37|     195|     280|     319|       4
---------------------------------------------------------------------------
  280-  319 (54.07/43.76)	KDISKDNRALGKLR.RECERAKRAlSNQHQVRVEIEAlyDG
  476-  513 (63.31/39.65)	RSLTKDCRMLGKFDlTGIPPAPRG.TPQIEVTFEVDA..NG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17006 with Med37 domain of Kingdom Viridiplantae
Unable to open file!