<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17002

Description Mediator of RNA polymerase II transcription subunit 23
SequenceMQKRVTAPNRDLPPRNQQFLLDFVQLQGQIQDQEQLRAVTESVLIAFVVQCCAHVPQSEFLLFALRSLSSVGHVKWDSFLPSLLSTISSAEGSSGPGSPTMAVSLSTAVVGSTGTSLISSGPNASGSFISTPASPLPSMQGIGSPTQSTAEQSSGPSLSPVKPSDLAGPGQLPIMKVNQSVRTTAISYLRQLASKVILIALESNLKPVTNAEIFSHMTNWLINWDQRNLGIDESDTAKGWKTERPPFEWMHICLDVIWKLVDEDRCLIPFYELIRSGLQFVDNIPDDESLFGIILEIHRRRDMVASHMQMLDQHLHCPSFGTHRFLSQTYPNVPGEPIANLRYSPITYPSVLGEPLHGEELAFSIQRGSLDWERALRCLRHALHTTPSPDWWRRVLLVAPCYRQQAQPPTPGAVFSPEMICEAVIERTIELLKFSNSEVQCWQDWLMFADIFFFLMKSGCIDFLDFVNKLASRVPQGDLRSNHVTWLLAQIIRIEIVMNTLSSDPKKVETTRKIISFHKEDKNTDVSSTSPQNILLDFISSSQTLRIWSFNSAIREYLNSEQLQKGKKIDEWWKQVTKGERMMDFMNVDERSMGMFWVLSYTMAQPACDAVMNWFTSAGVTEILQGPNVQSNDRMMMMRETCPLSMSLLSGLSINLCSKLAYQLEEGIFLGQRLQCHDSGLLALQLTYVVALASIAP
Length697
PositionTail
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.08
Grand average of hydropathy-0.093
Instability index52.30
Isoelectric point5.81
Molecular weight78163.94
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17002
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     118.75|      27|      28|     119|     145|       1
---------------------------------------------------------------------------
   70-   92 (28.19/13.07)	...........SVGHVKWDSFLPSLLST..ISSAEG
   96-  117 (25.38/11.01)	PGSP.......TMAVSLSTAVVGSTGTS..L.....
  119-  141 (35.42/18.41)	...........SSGPNASGSFISTPASP..LPSMQG
  142-  176 (29.76/14.24)	IGSPtqstaeqSSGPSLSPVKPSDLAGPgqLPIMK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.55|      15|      15|     324|     338|       2
---------------------------------------------------------------------------
  324-  338 (30.57/20.80)	RFLSQTYPNVPGEPI
  342-  356 (29.98/20.25)	RYSPITYPSVLGEPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.29|      11|      21|     378|     389|       9
---------------------------------------------------------------------------
  378-  389 (17.86/17.14)	CLRHALHtTPSP
  401-  411 (23.43/16.58)	CYRQQAQ.PPTP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17002 with Med23 domain of Kingdom Viridiplantae
Unable to open file!