<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16996

Description Heat shock cognate 70 kDa protein
SequenceMAGKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPVNTVFDAKRLIGRRFSDPSVQSDMKLWPFKVIPGPGDKPMIVVTYKGEEKQFSPEEISSMVLTKMKEIAEAFLGKSVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKGGSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKNSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERAKTKDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKTEDEEHKKKVEAKNALENYAYNMRNTINDEKIGGKLNPADKKKIEETIDKAIQWLDGNQLAEAEEFEDKMKELESVCNPIIAKMYQGAGGAMDEDVPRGGNSGAGAGPKIEEVD
Length646
PositionUnknown
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.06
Grand average of hydropathy-0.458
Instability index35.18
Isoelectric point5.31
Molecular weight70919.65
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16996
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.03|      50|      74|     412|     466|       1
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  412-  466 (75.61/51.84)	AGGVMTVLIPRNTTipTKKEQVFSTysdNQPGVLIQ......VYEGERAKTKDNNLLGKFE
  488-  543 (76.42/40.00)	ANGILNVSAEDKTT..GQKNKITIT...NDKGRLSKeeiekmVQEAEKYKTEDEEHKKKVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.01|      12|      74|     220|     258|       2
---------------------------------------------------------------------------
  206-  217 (21.16/27.03)	LGGGTFDVSLLT
  234-  245 (22.85/23.83)	LGGEDFDNRMVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     307.93|      85|     189|     121|     205|       3
---------------------------------------------------------------------------
   51-  119 (57.76/31.51)	...............ERLI..GDAAKNQVAMNPvnTVF.DAKR.....LIGRrfsDPSVQSDMKLwpFKVIPGPGDKPmivVTYKGEEKQF.S...............
  121-  205 (138.80/85.40)	EEISSMVLTKMKEIAEAFL..GKSVKNAVVTVP..AYFNDSQR.....QATK...DAGVISGLNV..MRIINEPTAAA...IAYGLDKKGG.SSGEKN.....VLIFD
  309-  401 (111.36/67.15)	EELNMDLFRKCMEPVEKCLrdAKMDKNSVHDV...VLVGGSTRipkvqQLLQ...D..FFNGKEL..CKSIN.PD.EA...VAYGAAVQAAiLSGEGNekvqdLLLLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.16|      20|      63|     561|     581|       4
---------------------------------------------------------------------------
  561-  581 (30.84/18.76)	DEKI..GGKLNPADKKKIEEtID
  625-  646 (31.32/14.94)	DEDVprGGNSGAGAGPKIEE.VD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16996 with Med37 domain of Kingdom Viridiplantae
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