<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16988

Description U-box domain-containing protein 33
SequenceMAKPSSSNSLRQPCSPPNSHSVIEEEPPMGSVEGEEEERKLYVAVPEKLKEGIELVLWVLRNTSTDKKIVILHVHRPPKLLPMMGAMVPVSKLGEEHVRIYRQQEKMMVEKSLDEYLVMCSKSMFRAEKLVVENDDVGLAIVELVASHRIKMLVMGAAADRHFSRKMTSPKSKIAITVQQNAHSLCKIWFVCKGQLICTRDEATNEYSSLSSSDQLRSKSLPQMQHEHFNQVTSPMPRSASENAVPFRRRPPMLKFSLPSLFRTPAAKSETSTDGTMSSRSSLTSSDSNWLWPTDDFNSSNRTVSRHKEDDGDSSSGMVTSQQDFHNLQLSSTFHELEGGDFLRDVYDRLEKVQTEAENFKHEAYRETIRRQKAERNAIEVAWKAKASESQHAKELKQKIELQKMLEDEIKENERLKNDRDKMFRGLQEARAREAEMVSCAAENKLLLEEFEDKLSEAKDSLEKLRAECEELKQARDIAIHEAQNLHQMTGKSSSGDQQQVKFSVFSYSELQEATKNFDHSLKIGEGGYGSVYKGFLRHTTVAIKLLNSKGMQGQAEFRQEVEVLSNVRHPHLVALIGTCPEAWALIYEYLPHGSLDDRLACKDKTDPLPWDVRIRIAAEICSALIFLQSNKPHGIVHGDLKPANILLDANFVSKLGDFGISRLLAQFNSTHTPCWNTNPKGTFVYMDPDFISSGDITLAADIYSFGIILLRLLTGKPVLGIISQVQEAVSNEKLHSILDRSAGKWPYIQAKQLVQLALKCCNVMRKNRPSLDGEVWKVLDIMVKVNERGKLRPLSSSSVSQNSTSIPSYFICPISQVRAKLFNDKKGLPLFYDLYLKLQEVMRDPHIAEDGFTYEAEVINKWFESGHNMSPMTNRQFQHHNLIPNHSLRSSIQEWLQKNA
Length901
PositionTail
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.07
Grand average of hydropathy-0.495
Instability index46.60
Isoelectric point7.18
Molecular weight102183.39
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16988
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.47|      31|      70|     201|     234|       1
---------------------------------------------------------------------------
  201-  234 (50.07/39.50)	DEATNEYSSLSSSDqlrSKSL.PQMQHEHFNQVTS
  274-  305 (51.40/32.42)	DGTMSSRSSLTSSD...SNWLwPTDDFNSSNRTVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     169.33|      51|      76|     756|     808|       2
---------------------------------------------------------------------------
  756-  808 (80.14/53.45)	QLALKCCNVMRKNRPSLDGEVWKVlDIMVKVNERG.KLRPLSSSSVsQNSTSIP
  834-  885 (89.19/51.55)	DLYLKLQEVMRDPHIAEDGFTYEA.EVINKWFESGhNMSPMTNRQF.QHHNLIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     239.36|      76|     562|      14|      95|       4
---------------------------------------------------------------------------
   14-   95 (112.12/89.67)	CspPNSHSVIEEEPPMGSVEGEEEERKLYVAVPEKLKEGIE.lVLWVLRNTSTDKKIVILHVH.RPPKLLpmMGAMVpVSKLGE
  580-  658 (127.24/78.51)	C..PEAWALIYEYLPHGSLDDRLACKDKTDPLPWDVRIRIAaeICSALIFLQSNKPHGIVHGDlKPANIL..LDANF.VSKLGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.68|      53|      53|     369|     421|       5
---------------------------------------------------------------------------
  369-  421 (84.76/51.86)	IRRQKAERNAIEVAWKAKASESQ.HAKELKQKI.ELQKMLEDEIKENERLKNDRD
  423-  477 (76.92/46.42)	MFRGLQEARAREAEMVSCAAENKlLLEEFEDKLsEAKDSLEKLRAECEELKQARD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.81|      10|      21|     100|     110|       6
---------------------------------------------------------------------------
  100-  110 (14.51/12.84)	IYRqQEKMMVE
  124-  133 (17.30/ 9.62)	MFR.AEKLVVE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16988 with Med32 domain of Kingdom Viridiplantae
Unable to open file!