<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16985

Description U-box domain-containing protein 35
SequenceMLFNGFRQLEQNTIYVFFNCMIDLRVHVEECRTEDVGVAVVVPRDTVLSLRIRHSWMTEAGPETTRDQADEEVNQLFLPYRGFTARKGMQLKEVVLEGADISKAIVDYINASSIQNIVVGASNRSIMKKLRSFDVPSSLMKSAPDFCAVYVLSKGKTTSIRAARNSTPNVIPPRQLSITATSLVLPDQEDSSRSSYSRRSWRVSGPPTPLHERTERRSIDLMPDYLNTSARDRPLSIARSAPPPNNLFMEKLDFANLSGSSVDYGSSFSDDIDIQGHSFQSMNIGNSLEFSSASVDSPTSKRHSVTGVNRELEAEMRRLKLELKQTMEMYSNACKEAVTAKQKAMELQQWKIEEAQKFEELRHAEEAALAMAEMEKVKCRAAVEAAETARKIAELEAHKRQNAERKARHEAEEKKKALDALTQTDTRYRRYTIDEIKAATNDFTAENKIGEGGYGPVYKAYLDHTPVAIKVLRAEAAQGRKQFQQEVEVLSCIRHPNMVLLLGACPENGCLVYEFMDNGSLDDRLFRKGNTPPIPWSTRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPCVADTVTQYHMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMLLQMITAKPPMGLTHHVERAIEKGTFARLLDPAITDWPVEDALSYAKLALKCAELRRKDRPDLATVVLPELNKLRKLGRDHEANRRHKGKSCRTGSNFSTPPRPHSNNNSQPRTGPLMQQEQVASNAGVTAKSTSPSDDDVKAG
Length779
PositionTail
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.06
Grand average of hydropathy-0.478
Instability index40.87
Isoelectric point8.51
Molecular weight87086.16
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16985
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.21|      45|     143|      41|      86|       2
---------------------------------------------------------------------------
   41-   86 (75.80/46.82)	VVP..RDTVLSLRIRHSWMTeAGPETT.RDQADEEVNQLFLPYRGFTAR
  184-  231 (72.41/40.68)	VLPdqEDSSRSSYSRRSWRV.SGPPTPlHERTERRSIDLMPDYLNTSAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     284.47|      87|     110|     505|     592|       3
---------------------------------------------------------------------------
  505-  592 (148.66/118.50)	C...PE...NGCLVYEfMDNGSLDDRLFRK.GNTPPIPWSTRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPP
  611-  704 (135.81/102.47)	CyidPEyqqTGMLGVK.SDIYSLGIMLLQMiTAKPPMGLTHHVERAIEKGTFARLLDPAITDWPVEDALSYAKLALKCAELRRKDRPDLATVVLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.45|      42|      44|     328|     371|       4
---------------------------------------------------------------------------
  328-  371 (67.88/54.34)	EMYSNACKEAVTAKQKA...MELQQWKIEEAQKfeELRH.AEEAALAM
  373-  418 (59.58/40.58)	EMEKVKCRAAVEAAETArkiAELEAHKRQNAER..KARHeAEEKKKAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.02|      15|     442|     277|     304|       6
---------------------------------------------------------------------------
  257-  271 (26.02/28.44)	LSGSSVDYGSSFSDD
  290-  304 (26.00/ 6.33)	FSSASVDSPTSKRHS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16985 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LRKLGRDHEANRRHKGKSCRTGSNFSTPPRPHSNNNSQPRTGPLMQQEQVASNAGVTAKSTSPSDDDVKAG
2) RKIAELEAHKRQNAERKARHEAEEKKKALD
3) SSYSRRSWRVSGPPTPLHERTERRSIDLMPDY
709
390
194
779
419
225










Molecular Recognition Features






MoRF SequenceStartStop




NANANA