<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16984

Description U-box domain-containing protein 34
SequenceMILSGELPEATVAVAVCDGGRSRRAVRWAARNLIPHAYRVLLLHVIPTVSFIPSPSGRRIPVEGMEKGVVDLFVEDVKAKAEEVFLPFRKLCRTKNVETLLMYGTSTEDVILNYMRDSGIKNLVLGSSSMGWIRRMLKGPDVPARALKSAPSSFNIFVVSRCKVTLKFGNHLLSDGSSISIQPKRISRKSFCPTEWNCISKKQSSSKSSEIHDLLIAPSDVDTNSDISGNFERTLSLSSVGIGEESKVDGRNTIVNKFEKLDASVTDILFLNLPSADNVNGGAPSEAIRVKLDVQKTLALYKKTCKDLLRAKKKLELLTDECSTKQKKVNVAEGAKHLEAIKEVEETRQLVGHKAEKLARKFTFVKSNALDDLFSSNKRFRRYSRHEIEAATDNFSDSRKIGEGAYGCVYMCNIDHIPVAVKVVWQDASDKKEEFLREVEVLSQLHHPHMVALLGVCPESGCLVYEYMENGSLEDQLFNRENSPPLPWFIRFRIIFEVACALAFLHGNKPDPIVHRDLKPGNILLDKNFVSKVGDVGLAKLISDIVPDSITEYKETILAGTWYYMDPEYQRTGTIRPKSDLYALGLITLQLLTGLQVRGLIIQVENAIEDRTFADILDKSVSDWPLIEAEKLAKIALKCSRLRCRDRPDLESEVLPELEELLNMANVCLKLKQYNVCAPGHYLCPILQEVMDDPYIAADGYTYELRAIKAWLDRHKVSPVTRLELPHPEVIPNHSLRVAIQEWKSRVSFSM
Length751
PositionTail
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.07
Grand average of hydropathy-0.192
Instability index44.45
Isoelectric point8.16
Molecular weight84365.49
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16984
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.17|      15|      28|     219|     233|       1
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  219-  233 (26.41/16.68)	SDVDTNSDISGNFER
  246-  260 (25.77/16.11)	SKVDGRNTIVNKFEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.08|      10|      29|     705|     714|       2
---------------------------------------------------------------------------
  705-  714 (19.07/11.93)	LR.AIKAWLDR
  736-  746 (15.01/ 7.94)	LRvAIQEWKSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.27|      28|      28|     636|     663|       3
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  636-  663 (46.71/30.64)	ALKCSRLRCRDRPDLESEVLPELEELLN
  665-  692 (46.56/30.51)	ANVCLKLKQYNVCAPGHYLCPILQEVMD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.47|      20|      24|      83|     106|       4
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   83-  106 (26.40/31.37)	EVFLPFRKLCRTKNvetLLMyGTS
  109-  128 (34.07/23.07)	DVILNYMRDSGIKN...LVL.GSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.22|      16|      28|     147|     162|       5
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  147-  162 (29.69/19.04)	LKSAPSSFNI..FVVSR...C
  172-  192 (18.53/ 9.26)	LLSDGSSISIqpKRISRksfC
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.35|      13|      28|     478|     491|       6
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  478-  491 (23.37/17.04)	FNRENSPPlPWFIR
  504-  516 (25.98/14.34)	FLHGNKPD.PIVHR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.88|      19|      22|     357|     378|       7
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  360-  378 (31.31/29.00)	RKFTFVKSNALDDLFSSNK
  381-  399 (32.57/20.12)	RRYSRHEIEAATDNFSDSR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.56|      14|      22|     313|     326|       8
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  313-  326 (23.04/14.67)	KKLELLTDECSTKQ
  336-  349 (22.52/14.19)	KHLEAIKEVEETRQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16984 with Med32 domain of Kingdom Viridiplantae
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