<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16983

Description U-box domain-containing protein 52
SequenceMEDGTSLLGSSSTAVAIDKDKNSKYAMKWAINNLVRSPIINIIHVRNKSSMTEVSTEVTRDQADAEINQLFLPYRGFCACKGMQLKEIVLEGVDISKAIIDYIKANHIQNIVVGISNKSLLMKKFRHPDVPSCLIKSAPDFCTVYVISKGKPTTVRSAKSPPPSTTFPPRQLPLLASPKFSPDHEDSARTPARGSWKSSAPATPLHESTEIISLDRLPDYMKTTLKDLPLSMASSSPNNQFMDNLDSSNWPRRSTDCIDTFLDEIDLPVGLSFNSMDFGDSFQHSSASIDSPRSSRSPIASQNRELENEMRKLKLELKQTMEMYSTACKEAITAKQKAMELQQWKLEESRKCEELRHAEETALAIAEMEKAKCKAAIEAAEAAQRIAELESQKRKNAEIKARREAMEKKKALEELAYNDIRYRKYTIDEIEAASNNFAVENKIGEGGYGPVYKGYLDHTPVAIKILKPDATQGRKQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMDNGSLEDRLFQRRNTPPIPWNVRFKIAAEIATALLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSIADSVTQYHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGVMLLQLITAKPPMGLTHHVERAIEKGTFEQLLDPSITDWPMDETLDFAKLALKCAELRRKDRPDLGAEVLPELNRLRNIGNEYKTSHHHSRTRSNFPPRPHSYNNPQTRARLLMQKEKVASNSGVVAMSKSSSDGDVQDE
Length767
PositionTail
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.06
Grand average of hydropathy-0.485
Instability index47.55
Isoelectric point7.56
Molecular weight86031.32
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16983
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      84.60|      19|      19|     360|     378|       1
---------------------------------------------------------------------------
  323-  343 (25.24/14.91)	M...YSTACK.EAIT....akQKAMELQQ
  344-  367 (16.23/ 7.05)	WkleESRKCE.E....lrhaeETALAIAE
  368-  388 (26.07/15.63)	M...EKAKCK.AAIE....aaEAAQRIAE
  389-  414 (17.06/ 7.78)	L...ESQKRKnAEIKarreamEKKKALEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.09|      19|      19|     241|     259|       2
---------------------------------------------------------------------------
  241-  259 (36.59/23.58)	FMDNLD.SSNWPRRSTDCID
  261-  280 (26.99/15.42)	FLDEIDlPVGLSFNSMDFGD
  282-  299 (24.51/13.30)	FQHSSA.SIDSPRSSRSPI.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.09|      37|     361|     126|     163|       3
---------------------------------------------------------------------------
  126-  163 (65.03/49.18)	RHPDVPsCLIKSAPDF.CTVY.VISKGK.PTTVRSAKSPPP
  488-  527 (58.06/38.80)	RHPNMV.LLLGACPEYgCLVYeFMDNGSlEDRLFQRRNTPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.46|      20|      35|     182|     201|       4
---------------------------------------------------------------------------
  164-  178 (18.90/ 7.91)	.....ST.....TFP.........PRQLPLLASP
  182-  201 (37.93/23.74)	PDHEDSA.....RTP.........ARGSWKSSAP
  204-  237 (21.62/10.17)	PLHESTEiisldRLPdymkttlkdLPLSMASSSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.80|      17|      28|     417|     433|       6
---------------------------------------------------------------------------
  417-  433 (29.10/19.22)	YNDIRYRKYTIDEIEAA
  448-  462 (26.19/16.61)	YGPV.YKGY.LDHTPVA
  468-  482 (18.51/ 9.70)	PDATQGRKQFQQEVE..
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16983 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LRNIGNEYKTSHHHSRTRSNFPPRPHSYNNPQTRARLLMQKEKVASNSGVVAMSKSSSDGDVQDE
703
767










Molecular Recognition Features






MoRF SequenceStartStop




NANANA