<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16980

Description Putative mediator of RNA polymerase II transcription subunit 36b
SequenceMRPPRGGGFRGRSDGGGGRGRGRGGGGRGEGRGGSRGRGFGGGRGAGRGGMRGRGGRGGMKGGSKVVVQPHRHDGVFVAKGKEDALCTKNMVSGESVYGEKRISVQNEDGTKVEYRVWNPFRSKLAAAILGGVDNIWIAPGSRVLYLGAASGTTVSHVSDIVGPTGMVYAVEFSNRSGRDLVNMAKKRTNVIPIIEDARHPTKYRMLVGMVDVIFSDVAQPDQARILGLNASFFLKNGGHFVISIKANCIDSTVPAEAVFAQEVKKLQADQFKPFEQVTLEPFERDHACVVGAYRVPKKKKLDS
Length304
PositionUnknown
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.07
Grand average of hydropathy-0.407
Instability index29.38
Isoelectric point10.25
Molecular weight32413.61
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:UniProtKB-KW

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16980
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.13|      16|      17|     194|     210|       2
---------------------------------------------------------------------------
  194-  210 (25.90/23.62)	IIEDARHPTKYRMLvGM
  214-  229 (27.23/19.08)	IFSDVAQPDQARIL.GL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.33|      10|      23|      16|      25|       3
---------------------------------------------------------------------------
   16-   25 (23.86/ 7.24)	GGGRGRGRGG
   41-   50 (23.48/ 7.01)	GGGRGAGRGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.27|      12|      19|     117|     128|       5
---------------------------------------------------------------------------
  117-  128 (22.74/15.00)	VWNPFRSK...LAAA
  136-  150 (17.53/10.02)	IWIAPGSRvlyLGAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16980 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MRPPRGGGFRGRSDGGGGRGRGRGGGGRGEGRGGSRGRGFGGGRGAGRGGMRGRGGRGGMKGGSKVVVQPHRHD
1
74










Molecular Recognition Features






MoRF SequenceStartStop




1) MRPPRGGGFRGRSDGGGGRGRGRGGGGRGEGRGGSRGRGFGGG
1
43