<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16978

Description U-box domain-containing protein 35
SequenceMLEKKEGNEVEADVRKGEISKKEMVEMGESLLPYSSTILVAINGTKSSKLALKWALNAFLSGGKVHLKLFYVRPPITMIPTPSKSQPIGVPHANFNSQTVRCCCTFGFSLDSHEMLHFSHPWQLKGCFGFPLEAIPLVPICCSFVVGNYLPISQVRDDIVSAYRKDIECQTSSMILPYKEICLRRKVDLEIVIREADDVAEEIGNEVENFQICRLVIGASSRNMITRKLKGMKMSNKISESTPVFCTVFIIKKGKLSAVRSRTDERSNNERSCVGSSCNSSVSCSESMDADTLQKSSHPENIYLQIRRVETLSTKDEKKDNKSDDTGSPCSILHSTTSSNSEDDINVQSLPTQMHDSKTKLSSNGNYGAKINSLALDMSSMSDDLSESLLTGNKERASLKENNIIKEETKEATGLEKKRLEASERDALFVKKCIKETSTVKATCKSEEEQRMEIASFSNDEKFKNYTWEEIESATSSLSDALKLGAGANGTVYKSTFDHTIAAVKILNSNEECGTKQFKQELEILTRIHHPHMLILLGACPTRGCLVYEYMENGSLDDRLKCKYNTPPLPWFYRLRIAWEVASALVFLHHSQPVPIVHRDLKPANILLNENFVSKIGDVGLSTLLPSMKSMITSPVGTFFYIDPEYQRTGLVSPKSDTYALGMVILQLLTAKQPMGLANIVEMAIEDGDLMEVLDPKAGQWPKGPAQELALLGLSCLELRPKDRPELKDHVLPVLKRLKEIADEASSLTSETPVLSPKS
Length759
PositionTail
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.06
Grand average of hydropathy-0.310
Instability index47.49
Isoelectric point6.30
Molecular weight84374.94
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16978
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.40|      33|     141|       7|      39|       2
---------------------------------------------------------------------------
    7-   39 (56.22/40.01)	GNEVE.ADVRKGEIS..KKEM.VEMGESLLPYSSTIL
  147-  183 (45.18/30.63)	GNYLPiSQVRDDIVSayRKDIeCQTSSMILPYKEICL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.50|      18|      23|     390|     411|       7
---------------------------------------------------------------------------
  390-  407 (29.07/24.44)	LTGNK....ERASLKENNIIKE
  415-  436 (24.42/ 9.57)	LEKKRleasERDALFVKKCIKE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16978 with Med32 domain of Kingdom Viridiplantae
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