<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16976

Description Pre-mRNA-processing protein 40C
SequenceMSSQVLVAQEAQEVPAPSMQSQTAESPILEAPQGSPPSNPSCIPAAAGGSGSNVAVPVTDPPNINSGPAEAVTVSPTTSSSAQRATHGIASDSSQDPVRAKFVTSHGYVVPPPSFSYSVFPRVSSASGIPQQTSSAPALKLTPQMSPAALQPPVPGQSLGNRPSFSYNIVPLPNASSASGQQFQPPAVNNQRQLLIGNSAPPPPPLATACLQPPVPRQPIRPNASISATVPQNFPPPMQFPVPPPKGQLSPSTNFSFGGGSQTTTVEASVKILQSSTSASDTVSVDTDITSASTGLDSKLSHDMRTSSSVGSTISPVSNASSMLPPTGSLINDRLPMVGTFTGNNLPKAPNPVAVQPANPPGSSSATMRPIQHNQVPAPSTQPSITNPTPQNVPQQIYPHFPLVPAQMPPPHAPWMPPQPAGLQCPRLPQYPAVLPGPFPFSVRDMPPPSVPSPDVRPPGVSHEVNREEALTSTPESSFPVSNTGAGSPPSDADFEKEANDIQEDGNSKSEELDAWTVHRTETGVLYYYNTISGESTYERPLKFKGETEKTALQIIPISWEKLSGTDWSLVTTNDLKKYYYNTVNKVSSWQVPAEVLEMRKNHVANSSKEENASIPADKGTTPSSLNASALQTGGRDSVTLRTSSGQASASALDLIKKKLQESATPIVSAPLQTSASPASDLNSTRALDVSAKGQQPLNSKDRVKDANGEGNISDSSSDSDDDESGPTKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAVPSYSARRAIFEQFVRTRAEEERKEKKAAQKAAINGFKQLLEEALEDMNHRLDFQTFKRKWGGDPRFEALDRKEREFLFNEKILLRKKADEEKINAERAASMSSFKSMLKEWQEISTSSRWSKVKDNLRNDPRYKTVNHEEREALFNEYIAELRAVEHEAERAAKAKKDEQDKLKEREREMRKRKEREEQEMERIRLKVRRKEAVSSYQALLVETIKDLKASWTDSKPKLEKDPQGRATNPDLNQVDAEKLFRDHIKDLYERCARDYRVLLAEILTADSAARSSENEKNFLNSWSEAKRVLKPDPRYSKMPRKDREALWLRYVEDLMRKQKSGADTKEKFNSEGKNRSPADASRRSPRRSHVRR
Length1130
PositionUnknown
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.06
Grand average of hydropathy-0.750
Instability index56.52
Isoelectric point8.76
Molecular weight123982.31
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16976
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     294.30|      47|      49|     113|     159|       1
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   41-  117 (38.64/ 8.95)	SC..IPAAAGGSGSnvavpvtdPPN...............INSGPaeAVTVSPTTSSSAQrathgiasdssQ.D.P..VR...AKFVtshgyvvppPSFSY
  118-  167 (84.27/27.00)	SV..FPRVSSASGI........PQQ...............TSSAP..ALKLTPQMSPAAL...........Q.P.P..VP...GQSL......gnrPSFSY
  168-  228 (46.69/12.14)	NIvpLPNASSASG..........QQfqppavnnqrqlligNSAPP......PPPLATACL...........Q.P.P..VP...RQPI......rpnASISA
  229-  257 (33.08/ 6.75)	TV....................PQ.........................NFPPPM................Q.F.P..VPppkGQ.L......spsTNFSF
  361-  400 (42.49/10.48)	.....PGSSSATMR........PIQ...............HNQVP..A....PSTQPSIT...........N.PtPqnVP......Q.........QIYPH
  401-  441 (49.12/13.10)	....FPLV..............PAQ...............MPPPH..APWMPPQ..PAGL...........QcP.R..LP....QYP....avlpgP.FPF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     433.84|      66|      66|     830|     895|       2
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  736-  802 (75.89/43.20)	FKEMLKE..RGVAPFSKWEKELPKIVfDPRFKA....VPSySARRAIFEQ....F.VRTR...AE.EERkeKK.AA...QKAAING
  803-  870 (96.08/56.71)	FKQLLEEaLEDMNHRLDFQTFKRKWGgDPRFEA....LDR.KEREFLFNEKI..L.LRKK...AD.EEK..IN.AE...RAASMSS
  871-  930 (80.15/46.06)	FKSMLKE.WQEISTSSRWSKVKDNLRnDPRYKT....VNH.EEREALFNEYI..AeLR.A...VE.HE......AE...RAA....
  931-  973 (45.50/22.87)	...........KAKKDE....QDKLK.EREREM....RKR.KEREEQEMERI..R.LK................VR...RKEAVSS
  974- 1046 (64.06/35.29)	YQALLVEtIKDLKAS..WTDSKPKLEkDPQGRAtnpdLNQ.VDAEKLFRDHIkdL.YERC...AR.DYR..VLlAE...ILTADSA
 1047- 1119 (72.16/40.71)	ARSSENE.KNFLNS...WSEAKRVLKpDPRYSK....MPR.KDREALWLRYVedL.MRKQksgADtKEK..FN.SEgknRSPADAS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     181.55|      49|      50|     483|     532|       3
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  483-  514 (40.25/18.66)	....................NT.GAGSPPSD.........ADFEKEAN.DIQEDGNSKSEELD
  516-  567 (76.09/43.56)	WTVHRTETGVLYYYNTIsgeST.YERPLKFK.........GETEKTAL.QIIPISWEKLSGTD
  568-  627 (65.20/32.38)	WSLVTTNDLKKYYYNTV...NKvSSWQVPAEvlemrknhvANSSKEENaSIPADKGTTPSSLN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.71|      12|      33|     273|     284|       4
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  273-  284 (18.60/12.84)	LQSSTSASDTVS
  304-  315 (19.11/13.45)	MRTSSSVGSTIS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.13|      13|      15|     672|     686|       5
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  672-  684 (22.23/13.90)	LQTSASPASDLNS
  688-  700 (22.90/ 7.47)	LDVSAKGQQPLNS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16976 with Med35 domain of Kingdom Viridiplantae
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