<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16975

Description U-box domain-containing protein 34
SequenceMDISKAIVDYIATNKVHNVVVGASSRNAITRKFKNPDVPSNVAKSAPDFCTVYVISKGKQVSVRSARSPAPANHTPPRQAQPLTVAPSNHLGSDDSIKAPFIRGNWRGTVPPPQIPERRSFEKNELMKPPTRERFVNPMKGSPCHALHDSLDIYCSQRPATSTPRESFSEDFDVQRNMGFRVPDFSESFEMNMSSITDISSTSTNANRDIEAEMKRLKLELKQTMDMYSTACKEAITSKLKAKELHDRKMEEARKVEEAKYAEEAALALVEREKARCKAAIEAAEAAQTLAEFEAQRRLNAELKAKHEAEEKLRALNELALKDQRYRKYNIDEIEIATEYFSESLKIGEGGYGPVYKASLDHTPVAIKVLRPDAAQGRKQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMDNGSLEDRLFRRGHSPPIPWPVRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDHNYTSKISDVGLSRLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGTKSDVYSLGVLLLQIITAKGPMGLTHIVERALERGTLVDLLDPTITNWPMEDVIRYTRLALKCSELRKKDRPDLGTVILPELNRLRNLGFEYQASCNSSSNGSTDGGSFGVHQRAKSACQIGLPTAKKNII
Length653
PositionTail
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.06
Grand average of hydropathy-0.450
Instability index42.67
Isoelectric point8.62
Molecular weight72888.45
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16975
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     137.40|      40|      44|     232|     271|       1
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  232-  261 (39.63/26.89)	...............CKEAITSKLKAKELH..DRKMEEARKVE...EAKY
  262-  307 (45.50/32.03)	AEEAALALVErekarCKAAIEAAEAAQTLA..E..FEAQRRLNaelKAKH
  309-  352 (52.27/37.96)	AEEKLRALNE...laLKDQRYRKYNIDEIEiaTEYFSESLKIG...EGGY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     161.29|      64|     431|     107|     201|       2
---------------------------------------------------------------------------
   26-   65 (41.92/12.90)	..........................................................RNAITRKFknpDVPSNVAKSAPDFCTVYVISKGKQVSVRS
   67-   93 (31.56/ 8.19)	RSPAPANHTPPRQA...QPLTVAPS.....NHL.GS..............................................................
  107-  201 (87.81/116.52)	RGTVPPPQIPERRSfekNELMKPPTrerfvNPMkGSpchalhdsldiycsqrpatstpRESFSEDF...DVQRNMGFRVPDFSESFEMNMSSITDISS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16975 with Med32 domain of Kingdom Viridiplantae
Unable to open file!