<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16966

Description U-box domain-containing protein 35
SequenceMQRKGSQLRQVGGKNEATAASQLVVVAIGSDKSSQHALKWAADHILSKNEIFILLHVRRKITTIPTPSGLQIPITDVDDDVSSAYIEQIDLQTKELLLPFQCFCSRRGLQCKEVILNESDIAKAIVDFVIFLAVDKLVVGSSNRNAFTRTFKNLDVPTAVSKTAPEFCSVYVISKGKISSVRPATRPKKLFANKLQELDSTGCPFQSVKSTPEVRRHFGPSGRIGAVHGTRNAIYERVYDNRTGEMTAIGSQNGGHIDVSYYSSTSCPSPFRASFDETEVSFSREIDADGNQLNISPFLNEYNGGEQGKGFVLKSYDYDICRNLIAYDHDNFSNATGYGNDIQLPNNGSNWQSNAGSNGIGHMPPIPKREVGSWSHHSIDDLESMMSSLKLELKHKRNSYDDSTPEIRPRNTSLDEVVVVAPKTALIKQRSILPLPESPKAIKLENEVNSQKSENHTWLQEIAEKRKELETISSDIRYRRYSVDEILKATDSFSDSLKIGEGGYGPVFKSTIDHTVVAIKILRSDVAQGIKQFQKEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMSNGNLEDRLFCSSGTPPLSWQIRFKIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDNNFVSKIGDVGLARLIPSSIAGATQYHMTAAAGTFCYIDPEYQKTGLVSTKSDIYALGVILLQLVTARPPMGLAHYVENSVEMGNFEQILDPNIPNWPKEQAMRLTKIALNCAELRCKDRPDLATAVLPQLNELRAFAESTIDPAWQASRWNSRSSREMRNSLSGIEEFATVERTRGHFSH
Length805
PositionTail
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.07
Grand average of hydropathy-0.340
Instability index44.98
Isoelectric point6.86
Molecular weight89472.45
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16966
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.49|      26|      66|     392|     417|       1
---------------------------------------------------------------------------
  392-  417 (45.57/28.08)	ELKHKRNSYDDSTPEIRPRNTSLDEV
  461-  486 (42.92/26.06)	EIAEKRKELETISSDIRYRRYSVDEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.81|      23|      65|     200|     226|       2
---------------------------------------------------------------------------
  200-  226 (35.72/32.47)	STGC..PFQSvkSTPEVRRHFgpSGRIGA
  264-  288 (38.09/21.32)	STSCpsPFRA..SFDETEVSF..SREIDA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16966 with Med32 domain of Kingdom Viridiplantae
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