<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16965

Description U-box domain-containing protein 33
SequenceMESPAYLSGRGEIEEELERPALESEAVYVALGKEFKQGKATLLWTLQNFRRPIVIIHVHRPPKMIPICTHLCPAKLAIFAEDLGAKFPASQLKEQEVIAFQQLDREKMNKSLDDYLLVCSELKIKAEKIVIEADAVAKGLIEFIAQQGITKFVMGAAADKHYSKKMKAPRSKTATTVRQQADTSCCIWFVCKGNFICTRKTDISSGLSDSPESIPSLAIQSEQLAITSEGMGETSKFNAQRIKNFFRHSSSSTVSGLHGGGGTMLNLSILSSSKSLFHGSEHILNRSYSGNSLDKLSKRSLQTEYSSCSGDDEVLSKSDFLSLPKDEESSVFFPSLHESDKDLNFSSPHNELEDAGVDLELYQKLQEALSEAEDLKHEVYMESLMRQRAERTVIEAIQRAKASENLYAEELNLRKEVDETLKRAKLEIEMLKKEQVELCEKLQKTNKHKLQLELHIGNLDNCVKDLEEKLLAALHLLHSLEVEHDVLQRERDEAIQEAEELRRKKEEVPCSILANLSAFSLSEIEQATCTFDNSLKIGKGGSGTVYKGFLRNTTVAIKALNHDGMLERSEFDQEVEILSRVRHPNLVSFIGACPEALTLVYEYLPNGNLEDLLSCKSNSKPLTWKARTRIATEICSALMFLHSSKPHPVVHGDLKPENILLDANLVSKLSDFGLCNFVVQADTTTLYRHSHPKGTFAYMDPEFLATGDLTPLSDVYSFGVIILRLLTGMPALGLVKVVQEVMNKQALYGIIDPTSGDWPLVQAKQLAHLGLRCCEMNRKNRPDLVGEVWKVLEPMSKAASFSAAQLSFSSITDDNCCIPSYFICPIFQEIMKNPHTAADGFTYEEEALRIWFNNGHNTSPMTNLKLSSSNLIPNRALRSAIQEWLQQQQKHL
Length892
PositionTail
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.07
Grand average of hydropathy-0.294
Instability index48.60
Isoelectric point5.86
Molecular weight99842.04
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16965
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.54|      15|      16|     284|     298|       1
---------------------------------------------------------------------------
  265-  281 (19.79/11.43)	LNLSIlsSSKSLFH..GSE
  284-  298 (26.64/18.28)	LNRSY..SGNSLDK..LSK
  301-  317 (22.11/13.75)	LQTEY..SSCSGDDevLSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     106.27|      20|      88|     397|     416|       3
---------------------------------------------------------------------------
  397-  416 (30.34/21.31)	IQRA.KAS.ENLYAEELNLRKE
  421-  441 (23.54/14.65)	LKRA.KLEiEMLKKEQVELCEK
  442-  462 (24.39/15.49)	LQKTnKHK.LQLELHIGNLDNC
  487-  506 (27.99/19.01)	LQRE.RDE.AIQEAEELRRKKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     124.70|      27|     630|     165|     191|       6
---------------------------------------------------------------------------
  165-  191 (52.37/40.88)	KMKAPRSKTATTVRQQ......ADTSCCI..WFVC
  790-  824 (37.36/26.82)	KVLEPMSKAASFSAAQlsfssiTDDNCCIpsYFIC
  830-  852 (34.97/24.58)	IMKNP..HTAADGFTY......EEEALRI..WF..
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16965 with Med32 domain of Kingdom Viridiplantae
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