<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16964

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMDPAGATSGDLESRFMAAFKASEERGDVPLARAMEVARCVGAGEGPNSELGQIIVSALCFENNTPSLWKLLDQAIAVRLLSPLHIIALLTARVIPHRRAQPEAYRLYLELLSRYGVALSLRDFGSSRDKITKSIDDALQLSHAYGIEKIDFSYMIVFCVLTIIIRLMDGILEDFGMQFAFSDKDANKSGTETFQDMDIDPVGNSIDKRKGHREQLHRCNILMTLEVVEKITADKKNKAFLRHIYLNMPEKFNSLLERLQLIEVHKSTLQSLISGNYIWAKLFANVHEVLDGEYKSNRFGLLGVLVDAGLSGPTFNYCLGNDRSACWIPFDIIMENAMDGSHLYAISSVEILTELTNTLQVFNQASWQETFMALFVSALRLVQRDREPWEGPIPHLDARLCMLLSIVPLTIVAVVKEEVHNPYPRSSYEYDLGTNKLTPRRDGLISSLQLLESYTALLTPPPSVINAANNAASKAATFITNFRNGSSSLGISGQKKASSVKAVGNMLHLIVEACIARKLIDTSAYFWPGYVVPYATSKDSMLIQESSWSTFMEGGQLNGSLEKILITVPASSVAELEKLYDKALNGSEEEQRSAAKILCGASLLRGWNIQEHAVRLVVKLLSPPIPAEFSGSGNSSHLIGYMPMISAVLFGVCSVEAVHIISLYGMVPEVAAALMPLCEAFGTFPPQSIHRTSHVDETSIDSVFSCAFLFLLRLWKFYKPPQEHCIAVRGGTIRVESTLDSLLLMHNHRIAFQDSGSIVKSNSSTDSPKTLSGEPVYVDSFPKLRAWYFQNQACVASTLSGLCSKNPVHQVANKILDMICRKMTKGGPVSGNLSSTSSSNISESPVNCAEDACQRIFLPAWEVLEAVPFVLEAFLTACAYGRLSSRDLTTGLRDLVDFLPASLAVIISYFSAEITRGIWKPVAMNGIDWPSPAANLLSVQLEMKEILASAGVTLPNVYACGPVPMLPLPMAALVSLTITFKLDKNMEYAHAVIGQALENCSAGSPWPSMPIIGALWTQKVRRWHDFIVLSSSLSPFTCDKETIAQLIRCCFSSFLSGSNYHGVSSLLGHSISTGKNFPFTIGPGYLYVRSCRSFHDTHFVNNMILNLVVEWTHELAVGRACNSSTAARLLSSRSSLASAASAVRKAATLGATLLCIAGGPLLLQVLYEETLPAMLLSTGDSGGGATGPATAAARLLEGYAMAYMLVLSGSFIWGTGKTSPAYTSLFTTRRARSVGMHLEFVAGGVEGKISVGRDPVTWRAYVTSLVGLLVRYVPAWILEVRQQTLRKLAGGLRAWGESELAVAILQRGGTESLGLLVEFLM
Length1320
PositionTail
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.08
Grand average of hydropathy0.157
Instability index45.62
Isoelectric point6.67
Molecular weight144069.74
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16964
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     303.46|     104|     131|    1040|    1170|       1
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 1050- 1170 (154.53/138.54)	FSSFLSGSNYHGVSS.....LLGHSIS.....TGkNFPFTIG...PGYlyvrscRSFHDTHFVNN..MILNLVVEWTH.ELAVGRacNSSTAARLLSSRSSLasaasAVR..KAATL...GATLLCIAGGpllLQVLYEETL
 1175- 1299 (148.93/80.67)	LSTGDSGGGATGPATaaarlLEGYAMAymlvlSG.SFIWGTGktsPAY......TSLFTTRRARSvgMHLEFVAGGVEgKISVGR..DPVTWRAYVTSLVGL.....LVRyvPAWILevrQQTLRKLAGG...LRAWGESEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.57|      14|     563|     390|     414|       2
---------------------------------------------------------------------------
  390-  414 (19.05/24.00)	GPIPHLdarlcmllsivPLTIVAVV
  960-  973 (28.53/12.11)	GPVPML...........PLPMAALV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.86|      38|     563|       3|      47|       3
---------------------------------------------------------------------------
    3-   47 (52.42/50.53)	PAGATSgDLESRFMAAFKASEERgdvplARAMEVARCvGAG..EGPN
  568-  607 (61.44/36.63)	PASSVA.ELEKLYDKALNGSEEE.....QRSAAKILC.GASllRGWN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16964 with Med33 domain of Kingdom Viridiplantae
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