<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16960

Description Mediator of RNA polymerase II transcription subunit 25
SequenceMAEKQLIVVVEGTAALGPYWQIVVSDYLEKIVRYFCGNELNGQKLSGANPELALVVFNSHGPYSAFLVQRTGWTKDLDVFLGWLSRVQFSGGGFGDAAIAEGLSDALTMFTVSTNGSQSLQNLDFQKHCILVAASNPYPLSSPVYFPPNPTTEQSDNPDAQTGTCLGDAEGVAKSFGQCFISLSVLCPRQLPKLKAIYIAGKRNPRAADPTVDNASNPHFTVLLSENFMEARAALSRPVIGSLATAQSVVKMDAAPTGAAPWTSSTSLQSVNGSMINRQQPSGNIPPAAVKVEPTTVPTMVSGSGYPHLPPISSVSSQVAPSLQTSSPSPTSQEMNITSEAMPEHKPLVNLSSQTLRPVSPANVSILNNLSQHREVMNSASITGANPIGLQTIGVTPMVMHVSNMISSGMASSGMSGALMTTTQVAQNTALGSFTSANSQVSGNSNMGISPALTNLQNSIGMGQSVQGMGQGNLTQSAQTGQGGINMTTSIMNGLGPAGLSSVPGTMIPTPGMSQQSSVNSLGMTNNTAINLPLTQQAPGVQQTQSKYVKIWEGALSGQRQGHPVFICKLEGYRNATASETLKSLTTKKIILFEKIRPIASSS
Length603
PositionUnknown
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.05
Grand average of hydropathy-0.084
Instability index41.60
Isoelectric point8.14
Molecular weight63148.92
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16960
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     231.47|      42|      43|     446|     487|       1
---------------------------------------------------------------------------
  239-  267 (36.52/11.98)	.......VIGSLATAQ..SVVKM................DAAP.TGAAPWTS.........STS
  359-  394 (51.94/19.70)	VSPANVSILNNLSQHR..EV..MNSAS.......I...TGANP.IGLQTI.............G
  395-  448 (44.41/15.93)	VTPMVMHVSNMISSGM..ASSGMS.GA.......LmttTQVAQnTALGSFTSansqvsgnsNMG
  449-  499 (63.63/25.55)	ISPALTNLQNSIGMGQ..SVQGMGQGN.......L...TQSAQ.TGQGGINMttsimnglgPAG
  500-  542 (34.97/11.20)	LSSVPGTMIPTPGMSQqsSVNSLGMTNntainlpL...TQQAP.GVQ.................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.45|      40|      43|       5|      47|       2
---------------------------------------------------------------------------
    5-   47 (61.53/55.13)	QLIVVVegTAALGPYWQIVVS.DYLEKIVRYFCGnELNGQKLSG
   51-   91 (67.93/48.13)	ELALVV..FNSHGPYSAFLVQrTGWTKDLDVFLG.WLSRVQFSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16960 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAPTGAAPWTSSTSLQSVNGSMINRQQPSGNIPPAAVKVEPTTVPTMVSGSGYPH
2) PPISSVSSQVAPSLQTSSPSPTSQEMNITSEAMPEHKPLVNLSSQT
254
310
308
355










Molecular Recognition Features






MoRF SequenceStartStop




1) ILFEKIRPIA
591
600