<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16959

Description U-box domain-containing protein 52
SequenceMILGIKPAAFCCATGTKHLESEMPLENMLDLQRVKAPCESNEAGTSLVAVAIDKGKSSQSALKWALDNLVHRGQTITLLHVNTKGNGAATAQAMEVFIPFRCFCTRKDVKCKDAILEGTDIAKAIVEFLLQAASIDKLVIGSQSKGAFVRLKSSCDVPSSISKSAPDFCSVYIISKGKVTSVRNAVRPSPPVSSLRGQILTQPSIKLQVVERPPRDLISEEREIIRSPFTRYGPNQRSRMEISVPEFDISFVSSEKSFPSSGRPSFDRSPLQPRASNASSSLESSLGFMGTPNRSEKLCEYFSNSYSQENLQNMEDVEAEMKRLRLELKHTMDMYSNACREAISAKQKAMELHRWKMEEENRLEKARLAEETALAMVEREKAKAKAAIEAAEASKRIAELEAKKRLDAEMKAVKEAEEKNKALNALHNDILRYRKYSIEEIELATDCFAESQKIGGGSYGPVYFGQLDHTPVAIKVLRPDASQSRLQFHKEVEILSRIRHPNMVLLLGACPEYGCLVYEYMANGSLDDRLFRRGNTPPIPWQHRFRIAAEIGTGLLFLHQAKPEPLVHRELKPANILLDHNYVSKISDVGLARLLPPAVAENVTQYRMTSVAGTFCYIDPEYQQTGILGIKSDVYSLGIVLLQLITGKPPMGITYHMQRAIDNGMLKDILDPTVMDWPMEDAKNLAHIALKCAELRRKDRPDLSKVVLPELNRLRKLGESNMQNCTMGNGLHSSPAQSQISIQACS
Length746
PositionTail
OrganismDendrobium catenatum
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Epidendroideae> Malaxideae> Dendrobiinae> Dendrobium.
Aromaticity0.06
Grand average of hydropathy-0.322
Instability index48.94
Isoelectric point8.64
Molecular weight83049.77
Publications
PubMed=26754549
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16959
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.53|      36|      40|     345|     384|       1
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  314-  342 (32.33/17.91)	............MEDvEAEMKRLRLELKHTMDMYSNACREA
  345-  384 (51.03/47.49)	AKQKAMELhrwkMEE.ENRLEKARLAEETALAMVEREKAKA
  393-  422 (44.17/29.06)	ASKRIAEL.....EA.KKRLD....AEMKAVKEAE.EKNKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.05|      32|     214|     467|     503|       5
---------------------------------------------------------------------------
  467-  503 (45.26/49.31)	LDHtpVAIKVL......RPDASQSRLqfhKEVEILSRIRHPNM
  685-  722 (48.79/34.18)	LAH..IALKCAelrrkdRPDLSKVVL...PELNRLRKLGESNM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     152.75|      40|      40|     219|     258|       6
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  183-  217 (32.19/18.61)	...RNAV.RpSP.....PVSSLRGQIlTQPSIKLQVVErPPRDL
  219-  258 (68.75/49.08)	SEEREII.R.SPFTRYGPNQRSRMEI.SVPEFDISFVS.SEKSF
  260-  297 (51.81/34.96)	SSGRPSFdR.SPLQPRASNASSSLES.SLG.FMGTPNR.SEK..
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16959 with Med32 domain of Kingdom Viridiplantae
Unable to open file!