<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16939

Description Putative mitochondrial carrier
SequenceMAKRPPTPADERIYHHPGLVGWWVGEMGGKAMDENMIHRYMSESPFFEWSSKNGLLFEQGKADWATYHMCNNRKALEDNLRGRVGLEYMIVQDPQPVADKELAAQGVTTGIYVIRKQDRQRAPSGPRVRPPGVILEDNWELTVLGTYFIVGEQAFQAPSMFDVVENRLLSAASSLNKLIDATSILPRYAPASGYTYLPPSQATKRTGTASIAGSPAGSREGSIAPGTDSQSLRSGSQLPESNVPTSKSLSDHDQTRLLASSLAMSIKYAHDYTDENPLMGEPGNFKFAMTEAAVKKRRAEEEAAAAEARAKKESASNISPRPQVAFPKADKAAAPAAFSTETKLKNEDKRKNSASGGKRKKDRKKGTSSAGPSPTTPGPTSRFSSLPPSQSSSINSLNYREQTFAMSPSLPSPKAGAGQVEKESGVARVLGAGSAGIAELAVFHPVDTIAKRLMSNQGKIVGSTQLNEVIFRKHAAEPFARRFFTLFPGLGYAAAYKVLQRVYKYGGQPFVRDYLSKNHGATFDNAFGKGNGKAIMHATAGSLIGIGEIVLLPLDVLKIKRQTNPEAFRGRGVLRIVADEGFALYRGWGWTAARNAPGSFALFGGSAAAKQYLYKLEDYNKATWLQNFVASIAGSSASLIVSAPLDVVKTRIQNQNFEVKKSGLKIVSDMARHEGPSSFFKGLVPKLLMTGPKLTFSFWLAQTLIPLINNKL
Length712
PositionHead
OrganismCercospora zeina
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Mycosphaerellales> Mycosphaerellaceae> Cercospora.
Aromaticity0.09
Grand average of hydropathy-0.372
Instability index43.08
Isoelectric point9.76
Molecular weight77199.95
Publications
PubMed=29242781

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-UniRule
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16939
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.50|      52|      64|     316|     371|       1
---------------------------------------------------------------------------
  316-  371 (79.76/42.16)	SNISPRPqvafPKADKAAAPAAFSTETKLKNEDKRKNSASGGKRKKD....RKKGTSSAG
  381-  436 (81.74/36.52)	SRFSSLP....PSQSSSINSLNYREQTFAMSPSLPSPKAGAGQVEKEsgvaRVLGAGSAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.29|      16|      16|     569|     584|       2
---------------------------------------------------------------------------
  569-  584 (27.97/15.66)	RGRG.VLRIVADEGFAL
  586-  602 (26.32/14.32)	RGWGwTAARNAPGSFAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.27|      48|     123|       4|      56|       3
---------------------------------------------------------------------------
    4-   56 (86.38/72.95)	RPPTPADERIYHHPGLVGWW.VGEMGGKA..MDENMIHRYMSESpffewSSKNGLL
  129-  179 (73.89/49.05)	RPPGVILEDNWELTVLGTYFiVGEQAFQApsMFDVVENRLLSAA.....SSLNKLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.96|      28|     418|     189|     216|       4
---------------------------------------------------------------------------
  189-  216 (52.39/33.70)	APASGYTY.LPP.SQAT.KRTGTASIAGSPA
  607-  637 (35.57/20.50)	AAAKQYLYkLEDyNKATwLQNFVASIAGSSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.59|      16|      95|     542|     562|       5
---------------------------------------------------------------------------
  542-  562 (21.64/23.56)	SLigigeIVLLPLDVLKIKRQ
  638-  653 (27.95/16.30)	SL.....IVSAPLDVVKTRIQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16939 with Med6 domain of Kingdom Fungi
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