<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16921

Description "Transducin (Beta)-like 1X-linked, transcript variant X1"
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAATTTAVSQQNTPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNSGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIMLASASFDSTVRLWDVDRGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGTLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length516
PositionTail
OrganismColumba livia (Rock dove)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Columbiformes> Columbidae> Columba.
Aromaticity0.08
Grand average of hydropathy-0.308
Instability index36.44
Isoelectric point5.40
Molecular weight56011.76
Publications
PubMed=23371554

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16921
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     385.66|      40|      40|     324|     363|       1
---------------------------------------------------------------------------
  161-  200 (45.75/27.38)	....PN..KatVLRGHESE...........VFICAWNPVS.........dlL.ASGS.GDSTARIWNL
  221-  255 (47.00/28.35)	GHDVP......S....NKD...........VTSLDWNSDG.........tlL.ATGS.YDGFARI.WT
  256-  286 (36.96/20.57)	EDGNLA..S..TLGQHKGP...........IFALKWNKKG..........nY............ILSA
  287-  338 (47.45/28.69)	GVDKTT..I..IWDAHTGEakqqfpfhsapALDVDWQNNT..........tF.ASCS.TDMCIHVCRL
  339-  380 (65.98/43.03)	GCDRPV..K..TFQGHTNE...........VNAIKWDPSG.........mlL.ASCS.DDMTLKIWSM
  381-  428 (51.75/32.02)	KQDTCV..H..DLQAHSKE...........IYTIKWSPTGpgtsnpnsnimL.ASAS.FDSTV...RL
  430-  473 (54.16/33.88)	DVDRGVciH..TLTKHQEP...........VYSVAFSPDG..........kYlASGS.FDKCVHIWNT
  474-  511 (36.60/20.30)	QSGTLV..H..SYRG.TGG...........IFEVCWNARG........dkvG.ASASdGSVCV.....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16921 with Med16 domain of Kingdom Metazoa
Unable to open file!