<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16917

Description "Transducin (Beta)-like 1 X-linked receptor 1, transcript variant X3"
SequenceMRLTSWYIDTCKSQDGTLFDGRPIESLSLIDAVMPDVVQTRQQAYRDKLAQQQAAAAAAAAATNQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGDVEIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDSCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK
Length459
PositionTail
OrganismColumba livia (Rock dove)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Columbiformes> Columbidae> Columba.
Aromaticity0.07
Grand average of hydropathy-0.383
Instability index28.10
Isoelectric point5.56
Molecular weight49836.94
Publications
PubMed=23371554

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16917
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     425.48|      40|      40|     267|     306|       1
---------------------------------------------------------------------------
   87-  126 (41.27/22.88)	..ANNHTDM.MEVdgdV..EIPPNKAV.VLRGHESEVFI.............CAWNPVS
  147-  182 (42.77/23.99)	S.TSGSTQLVLRH...CirEGGQDVP..S....NKDVTS.............LDWNSEG
  185-  223 (59.31/36.21)	L.ATGSYDGFARI......WTKDGNLASTLGQHKGPIFA.............LKWNKKG
  225-  262 (20.30/ 7.40)	F...........I...L..SAGVDKTTIIWDAHTGE..AkqqfpfhsapaldVDWQ...
  267-  306 (69.95/44.06)	F.ASCSTDMCIHV...C..KLGQDRPIKTFQGHTNEVNA.............IKWDPTG
  309-  348 (70.19/44.24)	L.ASCSDDMTLKI...W..SMKQDSCVHDLQAHNKEIYT.............IKWSPTG
  360-  399 (60.77/37.28)	L.ASASFDSTVRL...W..DVDRGICIHTLTKHQEPVYS.............VAFSPDG
  401-  440 (60.91/37.38)	YlASGSFDKCVHI...W..NTQTGALVHSYRG.TGGIFE.............VCWNAAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16917 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAAAAAATNQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGDVEIPPNKA
55
107










Molecular Recognition Features






MoRF SequenceStartStop




1) MRLTSWYI
1
8