<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16902

Description Mediator complex subunit 1
SequenceMLMNLLKENPPQDFSTLYGSSPLERQNSSSGSPRMEMGPGGNKQKKKKSRMPADKPKHQTEDDFQRELFSMDVDSQNPIFDVNITADALDTPHITPAPSQCSTPPTTYPQPIPHSQPSIQRMVRLSSSDSIGADVTDILSDIAEEASKLPATTEDCPPIGTPVRDSSSSGHSQSALFDPDVFQTNNSENPYTDPADLIADAAVSPNSDSSNHFFPDGVDFNPDLLNSQSQSGFGEEYFDESSQSGDTDDFKGYASQALTTLGVQVLGADGGENKFKGSNQSDTVDFSIIAAASKALGSSDIMEHHSGGQSPLLNAGDLGKEKSQKRVKEGNGSGGNMAGPGIDGKPGKRSRTPSSDGKSKEKLPKRKKQETDGKSPSHSSSNRPFTPPASTGGSKSPGSSGRSQTPPGVATPPIPKITIQIPKGTVTVGKPSSHGQYTSSGSVTSSSSKSHHSHSSSSSSSSSSSTSGKMKSSKSEGSSGSKMSSSLYSGQGGSSSGQSKSSAQSVGKSGSSPITKHGLSSGSGSAKMKPQGKPSSLMNPSMSKPNISPSHSRPSGGSDKLASPMKPVPNTPPSSKAKSPISSGSGGSHMSGTGSSSSMKSSSGMGSSGSMSQKPPPSSNSSTASSSSFSSSGSSMSSSQNQHGSSKGKSPSRNKKPSLTAVIDKLKHGVVTSGPGGDDPMDGQMGPSSNSSSHTMSSKHNMSGGDFQGKREKSDKEKSKVSVSGGSGDSSKKTSDSKNVGSTGVAKIIISKHDGGSPSIKAKVTLQKPGEGGGDGLRPQMASSKSYGSPLISGSTPKHERCSPSHSKSPAYTPQNIDSESESGSSIAEKSYQNSPSSDDGIRPLPEYSSEKHKKHKKEKKKVKDKDRDRDRDRDKDRDKKKSHGMKPESWSKSPISAEQPLSMASSAILAAERPARPSPEFLIGEEDDDLMDVALIGN
Length939
PositionMiddle
OrganismColumba livia (Rock dove)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Columbiformes> Columbidae> Columba.
Aromaticity0.03
Grand average of hydropathy-0.966
Instability index61.38
Isoelectric point9.22
Molecular weight97402.40
Publications
PubMed=23371554

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16902
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     528.59|      61|      61|     433|     493|       1
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  291-  347 (53.29/ 8.84)	.....AAS..K.AL.........GSSDIMEHH..SGGQSPLLNAGDLG.KEKSQKrvKE.GnGSG.GNMAG.....PGI............DGKPG
  348-  409 (56.30/ 9.90)	KRSRTPSS.dG.KSkeklpkrkkQETDGKS.PSHSSSNRPFTPPASTG....GSK..SP.G.SSGrSQTPP.......................GV
  433-  493 (107.12/27.87)	SHGQYTSS..G.SV.........TSSSSKSHHSHSSSSSSSSSSSTSG.KMKSSK..SE.G.SSG.SKMSS.....SLY............SGQGG
  495-  546 (65.73/13.24)	SSGQSKSS..AqSV.........GKSGSSPITKHG.LSSGSGSA.....KM...K..PQ.G.KPS.SLMNP.....SM..............SKPN
  550-  595 (64.73/12.88)	SHSR.PSG..G.SD.........KLASPMKPVPNTPPSS..........KAKSPI..SS.G.SGG.SHM......................SGTGS
  596-  677 (59.23/10.94)	SSSMKSSSgmG.SS.........GSMSQKPPPSSNSSTASSSSFSSSGsSMSSSQ..NQhG.SSK.GKSPSrnkkpSLTavidklkhgvvtSGPGG
  681-  729 (62.14/11.97)	MDGQ.........M.........GPSSNSSSHTMSSKHNMSGGDFQGK.REKSDK..EK.......SKVSV.....S..............GGSGD
  780-  841 (60.06/11.23)	QMASSKSY..G.SP.........LISGSTPKHERCSPSHSKSPAYTPQ.NI...D..SE.S.ESG.SSIAE.....KSY.......qnspsSDDG.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     378.67|      93|     106|      86|     178|       2
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   10-   81 (94.98/30.72)	....................PPQD......F.STLYGSSP.LER..QNSSSGSPRMEMGPGGN......KQKKKKSRMPA...DKPKHQT..EDDfqrelfSMDVDSQNPIFD
   86-  178 (159.90/56.21)	ADALDTPHITPAP..SQCSTPPTT......YPQPIPHSQPSIQRMVRLSSSDSIGADVTDILS......DIAEEASKLPATTEDCPPIGTPVRDS......SSSGHSQSALFD
  184-  285 (123.79/42.03)	TNNSENPYTDPADliADAAVSPNSdssnhfFPDGVDFN.PD...LLNSQSQSGFGEEYFDESSqsgdtdDFKGYASQ.ALTTLGVQVLGADGGEN......KFKGSNQSDTVD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16902 with Med1 domain of Kingdom Metazoa
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