<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16898
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDLAYVCEWEKKPKSNHCPSIPLVCAWSCRNLIAFTTDLRNEEEKDLTHMVHIIDTEHPWDVYSVNSGHTEVITCLEWDQSGSRLLSADADGHIKCWSMTDHLANSWESTVGSVVEGDPVVALSWLHNGVKLALHVEKSGASNFGEKFSRVKFSPSLTLFGGKPMEGWIAVTISGLVTVSLLKPNGQVLTSTESLCRLRCRVALADVAFTGGGNIVVATSDGSSASPVQFYKVCVSVVNEKCKIDTEILPSLFMRCTTDPARKDKYPAITHLKFLARDMSEQVLLCASNQSSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVANDTKFFPGLGLALAFHDGSVHIVHRLSLQMMAVFYGSSSQRPVDEQSLKRQRTAGPLIHFKAMQLSWTSLALAGIDSHGKLSMLRISPSMGHVLDMNMSLRHLLFLLEYCMVTGYDWWDILLHVQPNMVQNLVEKLHEEYMRQNAALQQVLSTRIVAMKASLCKLSSSTIARVCDYHAKLFLIAISCTLKSLLRPHFLNTPDKSPGDRLTEICSKITDIDIDKVMINLKTEEFVLEMTTLQSLQQLIQWVGDFVLYLLASLPNQGSPVRPGHSFLRDGASLGMFRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWLCCREENHITEPDDTLIDECCLLPSQLLIPNIDWLPINDGIISKLQNKQLVRLQFGKAPGLVGHTVSSQFDAFVRAPGQPKIDHLRRLHLGAYPTEECKSCTRCGCVTMLKSPNKVTAVKQWEQRWIKNCLCGGLWRRMPLSYS |
Length | 830 |
Position | Tail |
Organism | Columba livia (Rock dove) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda>
Coelurosauria> Aves> Neognathae> Columbiformes> Columbidae> Columba.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.006 |
Instability index | 48.17 |
Isoelectric point | 8.02 |
Molecular weight | 92773.87 |
Publications | PubMed=23371554
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP16898
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 328.15| 110| 134| 465| 587| 1
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465- 587 (168.53/146.32) FLLEYCMVTGYD...WW..DI...LLHVQPNmvQ.NLVEKLHeEYMRQNAAL....QQVLSTRIVAMKASLCKLSSSTIARVCDYHAKLFLIaisctLKSLL.....RPHfLNTPDkspgDRLTEIC....SKITDIDIDKVMIN
593- 724 (159.61/104.34) FVLEMTTLQSLQqliQWvgDFvlyLLASLPN..QgSPVRPGH.SFLRDGASLgmfrELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRL.....LTKLWlccreENH.ITEPD....DTLIDECcllpSQLLIPNIDWLPIN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 151.97| 48| 200| 76| 125| 2
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76- 125 (82.02/69.49) LEWDQSGSRLLSADADGH..IKCWSM.TDHL.ANSWESTVGSVVeGD..PVVaLSW
275- 328 (69.96/49.63) LARDMSEQVLLCASNQSSsiVECWSLrKEGLpVNNIFQQISPVV.GDkqPMI.LKW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 193.02| 60| 349| 373| 448| 3
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373- 448 (87.57/98.06) LAFHDGSVHIVHRLSLQMMAvFYGSSSQRPVDeqslkrqrtagpliHFKAMQL.SWTSLALAGIDSHGKLSMLRiSP
739- 799 (105.45/75.34) LQFGKAPGLVGHTVSSQFDA.FVRAPGQPKID..............HLRRLHLgAYPTEECKSCTRCGCVTMLK.SP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 56.30| 17| 140| 187| 231| 4
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20- 36 (34.08/ 8.41) SIPLVCAWSCR.NL..IAFT
191- 210 (22.23/48.42) STESLCRLRCRvALadVAFT
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