<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16895

Description Uncharacterized protein
SequenceMHNTERLLTIYSQFLAYHPFRFSFVRDILAYFYGHLPGKLVVRILSILDAQKIPFSELFQQLVSATNPICPPLDYFANLLLELVNNVIPPLNSNTDPGTYTQLILETSVIEILSLPVPASQIVSSLVQIIVNIQPTVIQSNNLRGAPNSIGGQGSVLPTSPSGGSTDSLSASRSSPSANTSNFVWRSGYTSEQLSCLLIQACGLLLSQLPADFHVQLYIQASQIIKDSWWLTDGKRSCGELESAVKYALLDPSWAAQDNTSTAISNIIALLHSFFSNLPQEWLEGTHTLSVLLSVLVDVFGKNTQLPTPIEASEITDLIDFLHHVVHYEGQGGPVQPSSKPKPDILALFAAVSESLRPDVQHLLSHLKPDVNSSIYAASYPKIPHNLLTT
Length390
PositionTail
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.08
Grand average of hydropathy0.133
Instability index51.29
Isoelectric point5.46
Molecular weight42663.14
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16895
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.32|      15|      16|      60|      74|       1
---------------------------------------------------------------------------
   60-   74 (28.03/17.92)	QQLVSATNPICPPLD
   78-   92 (25.29/15.46)	NLLLELVNNVIPPLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.94|      16|      16|     134|     149|       2
---------------------------------------------------------------------------
  134-  149 (27.88/18.23)	QPTVIQSNNLRGAPNS
  153-  168 (27.06/17.46)	QGSVLPTSPSGGSTDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.05|      12|      15|      14|      28|       3
---------------------------------------------------------------------------
   14-   26 (19.42/19.79)	FLAYHPFRFsFVR
   32-   43 (22.62/ 9.48)	FYGHLPGKL.VVR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16895 with Med23 domain of Kingdom Viridiplantae
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