<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16893

Description Uncharacterized protein
SequenceMDQPQQRPNSASRAYQFHPGRAAIMDLFNLYLGRSSRQKTGDSVREPPNKTQKRVVALNRELPPRNEQFILDFQQLLAQFGDQELRAVTESVFISLVVQCSGHAPRADFLLFALQSLCGIGHINWDTLVPSLLSSVSSAEMPMGQASQSMPTVSSSGLPQSGTIPSSNAIPNASSFQPSNPASPLTSAHGIGSPTQSMIEPSSGAAMSPVKLPDQFMTRVNSSIRDSAISSLRQLCCKIILTGLNFNLKPTTHAEIFSHMLNWLVNWDQRQQGSDESEGTKFWRPDKALTEWLHNCLDVIWLLVEQDKCRMPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTQRILSLTAPNISGEAVGNLRYSPITYPSILGEPLHGERGSLDWERALRCIRHAIRTTPSPDWWKRVLLVAPCYRPAGQPPTAGAVFTSEMISEATICRIIELLKLTNSVLISNIP
Length480
PositionTail
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.07
Grand average of hydropathy-0.211
Instability index60.17
Isoelectric point6.89
Molecular weight53506.70
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16893
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.51|      16|      16|     364|     379|       1
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  364-  379 (28.18/17.81)	GTQRILSLTAPNISGE
  382-  397 (30.33/19.71)	GNLRYSPITYPSILGE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     284.89|      86|     263|       2|      89|       4
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    2-   89 (139.32/107.45)	DQPQQrPNSASRAYQF.HPGRAAIMDLFNLyLGRSSRQKTGDSVREPPNKTQKRVVALNRELPPRNEQFIL........DFQQLLAQFGDQELRAVT
  268-  362 (145.57/102.14)	DQRQQ.GSDESEGTKFwRPDKALTEWLHNC.LDVIWLLVEQDKCRMPFYELLRSGLQFIENIPDDEALFTLileihrrrDMMAMHMQMLDQHLHCPT
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.92|      10|      16|     133|     142|       5
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  133-  142 (17.19/ 9.65)	LSSVSSAEMP
  150-  159 (18.73/11.15)	MPTVSSSGLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.16|      16|      22|     177|     198|       6
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  177-  198 (25.76/27.13)	QPSNPA..SPltsahgIGSPTQSM
  200-  217 (26.39/13.71)	EPSSGAamSP......VKLPDQFM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16893 with Med23 domain of Kingdom Viridiplantae
Unable to open file!