<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16891

Description Uncharacterized protein
SequenceMSICEVFGSCVPNSSWTLRTGEEISAHAVFSNAFTLLLKLWRFNHPPIEHGVGDVPTVGSQLTPEYLLYVRNSHLVSSGSVHRDQNKRRLSAVASSSSQNPVFVDSFPKLKVWYRQHQACIASTLSGLVPGTPVHQIVDGLLTMMFRKINEGGQSLISVNSGSSSSSGTRNEDSTLRPKLPAWDILEAVPYVVDAALTACAHGRLSPRELATGLKDLADFLPACLATIVSYFSAEVSRSIWKPVFMNGTDWPSPAANLANVEEQIKKILATTGVNVPSLSTGESSEATLPLPLAAFVSLTITYKIDKASQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKARRWSDFLIFSASRTVFLQNSDAIVQLLKSCFTSTLGLSSSPLSSNGGVGALLGHGFGSHFCGGISPVAPGILYLRVYRSIRDIVFITEEIVSLLMHSVREISCIDLSREKKVTDRTKRYGRVSLTSAMTRVKLAASLAASLVWLSGGLCLVQSLIMETLPSWFISIHRSEKEKGSSEGMVAMLRGYALAYFTVLCGAFTWGVDSSSSASRRRPRILGTHMEFLASVLDGKISLGCDWSTWQAYVSGFVILMVGCTPNWVLEVDVDVLKRLSRGLRQWNEDELALALLGVGGYRTMGAASELIIRDEV
Length650
PositionTail
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.08
Grand average of hydropathy0.172
Instability index46.32
Isoelectric point8.67
Molecular weight70590.53
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16891
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     251.88|      69|      71|      95|     165|       1
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   31-  103 (104.31/65.89)	SNAF..TlLLKLW..RFNHPP.IEHGV.GDVPTVGSQLTPEYLLY......VRNSHLVSSGSVH...........RDQNKRRLSavaSSSSQNPVF
  104-  172 (98.59/71.47)	VDSF..P.KLKVW..YRQHQAcIASTLsGLVPGTPVHQIVDGLLT......MMFRKINEGGQSL...........ISVNSGSSS...SSGTRNE..
  173-  245 (48.99/26.82)	.DSTlrP.KLPAWdiLE.................AVPYVVDAALTacahgrLSPRELATGLKDLadflpaclatiVSYFSAE....vSRSIWKPVF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16891 with Med33 domain of Kingdom Viridiplantae
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