<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16881

Description Uncharacterized protein
SequenceMAAAVSVQGGGGGGGGLWEAVIELTRAAQDKNVDPMVWAVQLSSSLNSARVALPSPDLAHLLVSHICWSNHVPITWKFLDKALSLNLVPPLLLLAHLSSRVIPCRLVYPTAYRLYMGLLKRQAFSFTALINTPDYAKIMKSIDDVLNLSQIFGLEECEPGILLVEFVFSIVWQLLDASLDDEGLLKLTSEKKSRWPTQPQDMEIDGQDSFSMKETEQQEILQKANTAMAIEMIVEFLQNTVTARILYLARRNMPIHWGGFLQRLRILAANSAALRNLKHMSPEAFLQLTSDKRNVLTREGKTVSQQEFHAVLASGSLISSAGQSYGASQSALWLPIDLFLEDAMDGSQVAATSSALQAVNGTTWHDTFLGLWISALRLVQRERDPSEGPVPLLDTCLCMLLSITTLAIANIIDEEESLLIEEAEQAVTYQRKDKQGRGNRRKDLISSLQQLGVYEGLLAPPQSVSCVANQAAAKAILYISGLTAGNGYIECLSMNDMPMNCSGNMRHLIVEACIARNLLDTSSYLWPGYVNARTHQIPRNIPNQVPGWSSLLKGSPLTPSLINTLVAIPASSLAEIEKIYEIALNGSDEEKISAATILCGASLFRGWNVQEHTVLFITRLLSPPVPTDYSGSESHLIGYAPFLNVLLVGVSSIDCVQIFSLHGLVPQLAGSLMPICELFGSAVPNVSWTLITGEELTSHMVFSNAFTLLLRLWRFDHPPLEHVKGDVPPVGTQLSPEFLLLVRNSQLASSGNSHNDRLKSSRLLKHLAPSLVEPMFMDSFPKLKLWYRQHQKCIASTLSGLVNGTSVHQIGDTLISMMFRKINRGGGGGGAPVTPATSASSCSSGATAEDIAMRLKVPAWDILEATPFALDAALTACAHGKLSPRELATGLKDLADFLPATLATIVSYLSAEVTRGIWKPAFMNGTDWPSPAANLSTVEQQIKKILAAIGVDVPSITTAGSSPATLPLPLAALVSLTITYKLDKASERFLTLIGPALNSLAAGCPWPCMPIITSLWAQKVKRWSDFLFFRASQTVFHHNSDAVVHLLQNCFTSALGLNSSQISANGGVGDLLGHGIGSHFSGGLTPVAPGILYLRVHRYVRDVMFMSEVIVSLLMQSVRQIASSGLPKDRIERLRKTKYGMRYGQVSLAAAMTRVKLAASLGASFVWISGGFNLVQSLIKETLPSWFISAQKLEREEGGEVGGMVAMLGGYCLAYFTLLCGMFAWGIDSASSASKRRPKALGAHLEFLASALDGKISLGCDRATWRAYVSGFVGLMVACAPTWVLEVDVDVLKRLSIGLRHWNEEELAVALLGKGGINAMSTAAELIVEIG
Length1331
PositionTail
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.07
Grand average of hydropathy0.187
Instability index44.88
Isoelectric point6.58
Molecular weight144212.23
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16881
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|    1065.58|     348|     813|       8|     397|       1
---------------------------------------------------------------------------
   10-  397 (505.12/394.22)	GGGGGGGlweAVIELTRA......AQDKNVD.....PmVWAVqlsssLNSARVALpspdLAHLlvsHICwsNHVPITWKFLDKALS..LNLVPPLL..LLAHLSSRVipCRLVYPTAyrlYM.GL.LKRQAFSFTALinTPDYAKIMKSID.DVLNLSQIfGLEECEPGILLVEFV.FSIVWQLLDASlddEGLLKLTSEK......KSRWPTQPQDMEIDGQDsfsMKETEQ.......QEILQKANTAmaiemIVEFLQNTVTARiLYLARRNMPIHwGGfLQRLRILAANSAALRNLKHMSPEA.FLQLTSDKRNVLTREGKTVS..QQEFHA.VLASG...SLI.....SSAGQSYG.ASQSALWLPIDLFLEDAMDGSQVAATSSALQAVNGTTWH...DTFLGLWISALRLVQRERDPSEGPVPLLDT.CL
  710-  824 (67.90/22.40)	..............................................................................................................................................................................................................................................................................................LRLWRFDHPPLEHVKGDVPPV.GTQL.SPEFLLLVRNSQLAS..SGNSHNdRLKSS...RLL.....KHLAPSLV.EPMFMDSFP.KLKLWYRQHQKCIASTLSGL..VNGTSVHqigDTLISM...MFRKINR.................
  825- 1213 (492.56/285.16)	GGGGGGA...PVTPATSAsscssgATAEDIAmrlkvP.AWDI.....LEATPFAL....DAAL...TAC..AHGKLSPRELATGLKdlADFLPATLatIVSYLSAEV..TRGIWKPA...FMnGTdWPSPAANLSTV..EQQIKKILAAIGvDVPSITTA.GSSPATLPLPLAALVsLTITYKLDKAS...ERFLTLIGPAlnslaaGCPWPCMPIITSLWAQK...VKRWSDflffrasQTVFHHNSDA.....VVHLLQNCFTSA.LGLNSSQISAN.GG.VGDLLGHGIGSHFSGGLTPVAPGIlYLRVHRYVRDVMFMSEVIVSllMQSVRQ.IASSGlpkDRIerlrkTKYGMRYGqVSLAAAMTRVKL..AASL.GASFVWISGGFNLVQS.LIK...ETLPSWFISAQKLEREEGGEVGGMVAMLGGyCL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.32|      32|     125|     488|     519|       2
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  488-  519 (58.94/30.42)	YIECLSMNDMPMNCSGNMRHLIVEACIARNLL
  616-  647 (54.38/27.56)	FITRLLSPPVPTDYSGSESHLIGYAPFLNVLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16881 with Med33 domain of Kingdom Viridiplantae
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