<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16880

Description Uncharacterized protein
SequenceMGCKSRALVFLLLFVSEFLLGLAVAADDNTPKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAALNAERTIFDVKRLIGRKFDDKEVQRDIKFLPYKVVNRDGKPYIQVKVKGEQKVFSPEEISAMILGKMKETAEAYLGKKIKDAVITVPAYFNDAQRQATKDAGTIAGLNVARIINEPTAAAIAYGLDKKGGETNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKALGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNLDLFKKTMGPVKTALEDAGLEKTDINEIVLVGGSTRIPKIQQLLKDFFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGEETKDLLLLDVAPLSLGIETAGGVMTKLIPRNTVIPTKKSQIFTTYQDQQTTVSIKVFEGERTLTKDCRELGRFDLSGIPPAPRGVPQIEVTFEVDANGILHVKAEDKAAKNSKSITITNDKGRLSQEEIDRMVEEAERFAEEDRKVKEKVDARNKLETYIYTMRSTVSDKDKLTDKIDSEDKEKVESTLKDALEWLDENQNAEKEDYDEKLKEVEAVCNPVIKQVYEKSGRSSGSSEDEDLNDEL
Length660
PositionUnknown
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.06
Grand average of hydropathy-0.437
Instability index28.29
Isoelectric point5.13
Molecular weight73111.05
Publications









Function






Annotated function


GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16880
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.89|      25|      26|     577|     601|       1
---------------------------------------------------------------------------
  577-  601 (39.46/19.82)	TMRSTVS..DKDKLTDKIDSEDKEK.VE
  603-  630 (29.42/13.22)	TLKDALEwlDENQNAEKEDYDEKLKeVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     400.50|     140|     259|      85|     261|       2
---------------------------------------------------------------------------
   85-  241 (184.94/188.08)	AKNQAALNA.ERTIFDVKRLIGRKfddKEVQRDIKFLpYKVVNRdGKPYIQVKVKgEQKVfspeEISAMILGKMKETAE.AYLGKKIKDAVITVPAYFNDAQ.RQATKDagTIAGLNVARIINePTaAAIAYGLDKKGGetnILVFDLGGGTFDVSILTI
  283-  425 (215.57/125.50)	SKDNKALGKlRRECERAKRALSSQ...HQVRVEIESL.FDGVDF.SEPLTRARFE.ELNL....DLFKKTMGPVKTALEdAGLEKTDINEIVLVGGSTRIPKiQQLLKD..FFDGKEPNKGVN.PD.EAVAYGAAVQGG...ILSGEGGEETKDLLLLDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.34|      18|     259|     244|     261|       3
---------------------------------------------------------------------------
  244-  261 (32.49/21.89)	GV......FEVLATNGDTHLGGED
  499-  521 (22.32/12.76)	GVpqievtFEVDA.NGILHVKAED
  526-  543 (25.54/15.65)	NS......KSITITNDKGRLSQEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16880 with Med37 domain of Kingdom Viridiplantae
Unable to open file!