<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16877

Description Uncharacterized protein
SequenceMATAGKVNVTPLEEKTPDDEPVTYPSKQEAKNAFKALLESFNVQSDWTWEHAMREIINDKRYGALKTLGERKQAFNEYLGQRRKLEAEERRVRQKKAREEFTKMLEECKELTSSIKWSKAVSMFENDERFKAVEKNRDREDLFDSFMVDLERKEKEKAAEEHRHNITEYRKYLESCDFIKVNSQWRKIIDRLEDDERYLRLEKIDRLLIYQDYIRDMEKEEEEGKKIQKEQTRRAERKNRDEFRKLMEGHASAGILTAKTHWRDYCLKVKDSAEYQAVASNTSGSTPRELFEDVAEELEVKFYEDKVRVKDAMKSGKVSMVSTWTFEDFRAGVLDNLGHPLISEINLELVYKELLERAKEKEEKEAKKRQRIADDFTRLLHTFKEITLSSTWEECKPLVEESYEFKSVGEESSAKEIFEEYIAHLQEKAKEKERKREEEKVRKEKEREEKEKRKDKERKERDREREREKGKERSKKDDTDSDTADANDSYGYKDDKKREKEKERKHRKRHQSASDEVYSDKEEKESKRSRRQSSDRKKSRKHAHSPVSDGESRHKKHKRDHRDSSRRNGGYEELEDGEVGEDGEIQQS
Length588
PositionUnknown
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.07
Grand average of hydropathy-1.477
Instability index47.46
Isoelectric point6.65
Molecular weight70310.43
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16877
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     523.27|      66|      67|      98|     163|       1
---------------------------------------------------------------------------
   31-   95 (82.06/33.55)	KNAFKALLESF.N...VQSDWTWEHAMREII..ND.KRYGALKTLGE....RKQAFNEYLGQRR.........KLE.......AEERRVRQK
   98-  163 (103.83/44.23)	REEFTKMLEECKE...LTSSIKWSKAVSMFE..ND.ERFKAVEKNRD....REDLFDSFMVDLE.........RKE.......KEKAAEEHR
  166-  237 (80.31/32.69)	ITEYRKYLESCDF...IKVNSQWRKIIDRLE..DD.ERYLRLEK.ID....RLLIYQDYIRDME.........KEEeegkkiqKEQTRRAER
  240-  295 (53.04/19.32)	RDEFRKLMEGHASagiLTAKTHWRDYCLKVK..DS.AEYQAVASNTSgstpRE.LF................................EDVA
  296-  362 (62.88/24.14)	EELEVKFYEDKVR...VKDAMK.SGKVSMVStwTF.EDFRAGVLDNL....GHPLISEINLELV.........YKE.......LLERAKEKE
  373-  435 (84.19/34.59)	ADDFTRLLHTFKE...ITLSSTWEECKPLVE..ES.YEFKSVGEESS....AKEIFEEYIAHLQ.........EKA.......KEK...ERK
  442-  507 (56.95/21.24)	RKEKEREEKEKR............KDKERKE..RDrEREREKGKERS....KKDDTDSDTADANdsygykddkKRE.......KEK.ERKHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.17|      21|      25|     526|     550|       2
---------------------------------------------------------------------------
  526-  550 (32.94/27.16)	SKRSRRQSSDRKKSrkhaHSPVSDG
  557-  577 (38.23/21.24)	HKRDHRDSSRRNGG....YEELEDG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16877 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KAKEKERKREEEKVRKEKEREEKEKRKDKERKERDREREREKGKERSKKDDTDSDTADANDSYGYKDDKKREKEKERKHRKRHQSASDEVYSDKEEKESKRSRRQSSDRKKSRKHAHSPVSDGESRHKKHKRDHRDSSRRNGGYEELEDGEVGEDGEIQQS
428
588










Molecular Recognition Features






MoRF SequenceStartStop




1) DEVYSD
2) NDSYGYKDD
3) RHKKHKRDHR
515
487
553
520
495
562