<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16876

Description Uncharacterized protein
SequenceMEEDLVGPATVFSIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECAVFNVRADSPRDSVQFIEWSPASCPRALLIANFHGSVTIWTQPSQGPANVVRDASCWQCEHQWRQDIAVVTKWLSGVSPYRWLSSKSSSTGAKSTFEEKFLAQQSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAAPKWFHTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGSGLQAIPMASANQGVVPPSVNPPNWAGFAPLAAYLFSWQEYLISEAKQGKKQTDQELTDSVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTCGGSVIAIVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHHIFGNPSSSFGGQAPMQTVWQSKVDTSIPPTSDFKGHQASAPGPTTDVQKTSDSSVENGKRLSFDPFDLPSDVRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFFRVDNYQINVGSAIAAPAFSSTSCCSASVWHDTKRDQTILKIIRVLPPAVPSSQVKANSTTWERAIAERFWWSLLVGVDWWDAVGCTQSAAECGVASLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVSEPWQASSDMLTRIDPEAMAVEAALVPTVQAYVDAVLDLASHFITRLRRYASFCRTLASHAVNAGTGSNRNMVASPNQSSASPATSQGGQSGSASSTGSTQMQAWVQGAIAKISSTNDGTPNSAINPISGPPSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLHRFTTGGQRSSESTAQKPQAGAPGKTEEINSVSSKPNPVIARADESQAARGGQLVSGAKGGEDGGGSGRSRLGSGNAGQGYTFEEVRVLFLILMDLCRRTASHPHPLPGSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMYGGPWSDPDDVGSMDDNVKLGSSAVGLINANPMENCNTYPGVYSLWPKKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVITAVWKTGLEGTWYKCMRCLRQTSAFTPPGATNSPNLNEREIWWISRWVHGCPMCGGTWVRVV
Length1196
PositionTail
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.08
Grand average of hydropathy-0.182
Instability index46.04
Isoelectric point7.12
Molecular weight128846.99
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16876
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     118.04|      23|     536|     592|     628|       1
---------------------------------------------------------------------------
  592-  614 (46.20/19.02)	RAIAER.FWWSLLVGVDWWDAVGC
 1131- 1152 (40.71/14.95)	RDVITA.VWKTGLEG.TWYKCMRC
 1168- 1185 (31.13/33.37)	PNLNEReIWW.....ISRW.VHGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     413.36|     118|     534|     284|     407|       2
---------------------------------------------------------------------------
  216-  298 (117.29/42.64)	PPSQNGAAP...KWFHTSKGLLGAGPSGIMAADAIITDSGAMHVAgvPIVNPSTVVvwevtpGPGSGLQA...........................................................................................iPMASANQGVVPPSVN
  299-  451 (186.79/78.46)	PPNWAGFAPlaaYLFSWQEYLISEAKQGKKQTDQELTDSVSLHCS..PVSNFSAYV......SPEAAAQSAATTTWGSGVT........AVAFDPT.....CGGSVIAIVIV.E.GQYMSPYDPDEGPSitgwrvqrwesslqpvvlhhifgnpsssfggqaPMQTVWQSKVDTSI.
  452-  494 (38.79/ 9.42)	PP...............................................................................tsdfkghqASAPGPT.....TDVQKTSDSSV.EnGKRLS.FDPFDLPS................................................
  768-  835 (70.48/22.63)	.................................................SNRNMVA......SPNQSSASPATSQGGQSGS........ASSTGSTqmqawVQGAIAKISSTnD.GTPNSAINPISGP.............................................PSFM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.94|      36|     114|     727|     767|       3
---------------------------------------------------------------------------
  727-  767 (50.30/46.50)	PTVQAyVDAVLDlaSHFITRLRRYASFC...RTLASHAVNagTG
  845-  883 (64.64/39.98)	PGTPA.VRLIGD..CHFLHRLCQLLLFCfffRRTQLHRFT..TG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.09|      13|     573|     415|     428|       4
---------------------------------------------------------------------------
  415-  428 (20.60/19.83)	SSLQpVVLHHIFGN
  992- 1004 (25.49/17.71)	SNIQ.VRLHYIDGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.94|      39|     534|     518|     563|       5
---------------------------------------------------------------------------
  518-  563 (53.41/54.54)	GGVhiFSGPN.FFRVDNyQINVGSA....IAAPAFSStscCSA.....SVWhDTKR
 1055- 1103 (60.54/35.04)	GGP..WSDPDdVGSMDD.NVKLGSSavglINANPMEN...CNTypgvySLW.PKKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.40|      22|      71|      12|      33|      10
---------------------------------------------------------------------------
   12-   33 (40.02/24.17)	FSIRLKQPRSNLQHKMSVPELC
   85-  106 (41.38/25.24)	FNVRADSPRDSVQFIEWSPASC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16876 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GTGSNRNMVASPNQSSASPATSQGGQSGSASSTGS
2) TTGGQRSSESTAQKPQAGAPGKTEEINSVSSKPNPVIARADESQA
765
881
799
925










Molecular Recognition Features






MoRF SequenceStartStop




NANANA