<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16876

Description Uncharacterized protein
SequenceMEEDLVGPATVFSIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECAVFNVRADSPRDSVQFIEWSPASCPRALLIANFHGSVTIWTQPSQGPANVVRDASCWQCEHQWRQDIAVVTKWLSGVSPYRWLSSKSSSTGAKSTFEEKFLAQQSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAAPKWFHTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGSGLQAIPMASANQGVVPPSVNPPNWAGFAPLAAYLFSWQEYLISEAKQGKKQTDQELTDSVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTCGGSVIAIVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHHIFGNPSSSFGGQAPMQTVWQSKVDTSIPPTSDFKGHQASAPGPTTDVQKTSDSSVENGKRLSFDPFDLPSDVRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFFRVDNYQINVGSAIAAPAFSSTSCCSASVWHDTKRDQTILKIIRVLPPAVPSSQVKANSTTWERAIAERFWWSLLVGVDWWDAVGCTQSAAECGVASLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVSEPWQASSDMLTRIDPEAMAVEAALVPTVQAYVDAVLDLASHFITRLRRYASFCRTLASHAVNAGTGSNRNMVASPNQSSASPATSQGGQSGSASSTGSTQMQAWVQGAIAKISSTNDGTPNSAINPISGPPSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLHRFTTGGQRSSESTAQKPQAGAPGKTEEINSVSSKPNPVIARADESQAARGGQLVSGAKGGEDGGGSGRSRLGSGNAGQGYTFEEVRVLFLILMDLCRRTASHPHPLPGSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMYGGPWSDPDDVGSMDDNVKLGSSAVGLINANPMENCNTYPGVYSLWPKKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVITAVWKTGLEGTWYKCMRCLRQTSAFTPPGATNSPNLNEREIWWISRWVHGCPMCGGTWVRVV
Length1196
PositionTail
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.08
Grand average of hydropathy-0.182
Instability index46.04
Isoelectric point7.12
Molecular weight128846.99
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16876
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     118.04|      23|     536|     592|     628|       1
---------------------------------------------------------------------------
  592-  614 (46.20/19.02)	RAIAER.FWWSLLVGVDWWDAVGC
 1131- 1152 (40.71/14.95)	RDVITA.VWKTGLEG.TWYKCMRC
 1168- 1185 (31.13/33.37)	PNLNEReIWW.....ISRW.VHGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     413.36|     118|     534|     284|     407|       2
---------------------------------------------------------------------------
  216-  298 (117.29/42.64)	PPSQNGAAP...KWFHTSKGLLGAGPSGIMAADAIITDSGAMHVAgvPIVNPSTVVvwevtpGPGSGLQA...........................................................................................iPMASANQGVVPPSVN
  299-  451 (186.79/78.46)	PPNWAGFAPlaaYLFSWQEYLISEAKQGKKQTDQELTDSVSLHCS..PVSNFSAYV......SPEAAAQSAATTTWGSGVT........AVAFDPT.....CGGSVIAIVIV.E.GQYMSPYDPDEGPSitgwrvqrwesslqpvvlhhifgnpsssfggqaPMQTVWQSKVDTSI.
  452-  494 (38.79/ 9.42)	PP...............................................................................tsdfkghqASAPGPT.....TDVQKTSDSSV.EnGKRLS.FDPFDLPS................................................
  768-  835 (70.48/22.63)	.................................................SNRNMVA......SPNQSSASPATSQGGQSGS........ASSTGSTqmqawVQGAIAKISSTnD.GTPNSAINPISGP.............................................PSFM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.94|      36|     114|     727|     767|       3
---------------------------------------------------------------------------
  727-  767 (50.30/46.50)	PTVQAyVDAVLDlaSHFITRLRRYASFC...RTLASHAVNagTG
  845-  883 (64.64/39.98)	PGTPA.VRLIGD..CHFLHRLCQLLLFCfffRRTQLHRFT..TG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.09|      13|     573|     415|     428|       4
---------------------------------------------------------------------------
  415-  428 (20.60/19.83)	SSLQpVVLHHIFGN
  992- 1004 (25.49/17.71)	SNIQ.VRLHYIDGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.94|      39|     534|     518|     563|       5
---------------------------------------------------------------------------
  518-  563 (53.41/54.54)	GGVhiFSGPN.FFRVDNyQINVGSA....IAAPAFSStscCSA.....SVWhDTKR
 1055- 1103 (60.54/35.04)	GGP..WSDPDdVGSMDD.NVKLGSSavglINANPMEN...CNTypgvySLW.PKKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.40|      22|      71|      12|      33|      10
---------------------------------------------------------------------------
   12-   33 (40.02/24.17)	FSIRLKQPRSNLQHKMSVPELC
   85-  106 (41.38/25.24)	FNVRADSPRDSVQFIEWSPASC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16876 with Med16 domain of Kingdom Viridiplantae
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